PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_41398_a_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 297aa MW: 34364.5 Da PI: 8.6976

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_41398_a_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.2	1e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw ++++++eHnHel p Neem_41398_a_1 29 YYREYAKSMGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKQNGKWFIYSFVKEHNHELLP 114 8*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	29	114	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDSSEITGST ILEPRDDMEF ESHEAAYAYY REYAKSMGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKQNGKWF IYSFVKEHNH ELLPAQAHFF 120 RSHRNVDPLK NDVRIRRRKN LAAVSKLFSA YQNVDCLESY MRNQHDKGRS LILDPGDSQW 180 IQSLYEDRKH WVPTFMKGVS FAALSTPSRS ESLNSLFDKY VHGETLLREF IEQYRVIRED 240 MYEEEAKADF DAWHETPELK SPSPFEKQMS LVYTHEIFKK FQVEVLGAAA XLSGGVG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493664.1	1e-117	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_006493665.1	1e-117	protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	7e-79	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2H5NMJ7	1e-178	A0A2H5NMJ7_CITUN; Uncharacterized protein
STRING	XP_006493664.1	1e-117	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	2e-69	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]