PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_40433_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 274aa MW: 30701.1 Da PI: 8.9716 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6e-14 | 19 | 93 | 25 | 97 |
TT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 25 eh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ ++kk+ ++t++l+ +sg +W v + + +++ ++ GW eFvk + L+e+D++ Fk++g+s f v +f Neem_40433_f_1 19 AIpekvvkNLKKKLPVTVSLKGPSGFTWVVGI--TTRDNILYFCHGWPEFVKNHFLQENDILFFKYNGDSLF--DVLMF 93 4444444456677*******************..9999999*************************998877..66555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.6E-4 | 6 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-16 | 19 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-18 | 19 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.7E-11 | 20 | 88 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.956 | 20 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.49E-13 | 33 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MAGDICFSPL KLPIKLLEAI PEKVVKNLKK KLPVTVSLKG PSGFTWVVGI TTRDNILYFC 60 HGWPEFVKNH FLQENDILFF KYNGDSLFDV LMFDGQSKCE KAASYFVRKC GHTDHDGEYQ 120 TKRKIGENSV EVIPTSPQCD VGGASPEKTD DDDINKTPAG QPVVSQASSK RVRRVNSSVK 180 PVHTRRSLRS KELCTSFVEN EKAKPVAEPT SFIGDVASSP HYASNRRPVT EDEKKNAMLL 240 AQAALTADSF TVVMRPTHVY RRFYMVTEHF VSIL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434884.1 | 2e-91 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024038869.1 | 2e-91 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024038870.1 | 2e-91 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A1Q3CHQ8 | 2e-91 | A0A1Q3CHQ8_CEPFO; B3 domain-containing protein | ||||
STRING | XP_006434884.1 | 9e-91 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-26 | B3 family protein |