PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_40293_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | CO-like | ||||||||
Protein Properties | Length: 358aa MW: 41150.6 Da PI: 6.2263 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6e-07 | 19 | 61 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ ++e + l+C+ ++ lC C e H+ H++ Neem_40293_f_1 19 RRFCDYCNERTAVLYCRADSAKLCLPCDREVHSTnqlfskHSR 61 689*******9*********************66677777765 PP | |||||||
2 | zf-B_box | 24.1 | 7.4e-08 | 63 | 109 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42 C+ ++ ++++fCe q lC +C e H++ H+++p+ Neem_40293_f_1 63 LLCDACDASPASIFCEIEQFVLCTNCDWENHSQgnlylspvHNRRPI 109 68*****************************7789999999988876 PP | |||||||
3 | CCT | 63.7 | 5.7e-22 | 314 | 356 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeKrktR+++K+irYesRK++AesR R+KGrF++ Neem_40293_f_1 314 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFARI 356 899**************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.566 | 17 | 64 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.3E-14 | 17 | 64 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.76E-8 | 20 | 64 | No hit | No description |
PROSITE profile | PS50119 | 10.111 | 60 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.9E-5 | 63 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.60E-4 | 64 | 109 | No hit | No description |
SMART | SM00336 | 0.73 | 65 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.4E-16 | 314 | 355 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.872 | 314 | 356 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MTEHQPRQQQ HHQEEPPKRR FCDYCNERTA VLYCRADSAK LCLPCDREVH STNQLFSKHS 60 RSLLCDACDA SPASIFCEIE QFVLCTNCDW ENHSQGNLYL SPVHNRRPIE SFTGCPSVSE 120 LFTVVGFHHL DHKALFLTCE NGNNSNVSDE LSDFLAWEPP DFNRYASCGQ HKDEMLSQLR 180 QLAELEPNFK YESADVETFI GFQSPVPEPD FQPGNLHTSA ERDAEPVLFP AYETSSLQWP 240 TDSCEAANQR PLTSLRNHFE ESFTVPDKHL DTTGCVRNVS VSDGDEGRSQ HPITAETSPV 300 FPKVSVHELN SQDRDSAISR YKEKRKTRRY DKHIRYESRK VRAESRTRIK GRFARIDH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444238.1 | 1e-166 | zinc finger protein CONSTANS-LIKE 13 | ||||
Refseq | XP_024045635.1 | 1e-166 | zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A2H5NL06 | 1e-166 | A0A2H5NL06_CITUN; Uncharacterized protein | ||||
STRING | XP_006444238.1 | 1e-166 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 1e-82 | B-box type zinc finger protein with CCT domain |