PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_40209_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 157aa    MW: 18203.6 Da    PI: 7.6653
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_40209_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.92.2e-10801152055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps+++++ L++++gL+ +q+ +WF N+R ++
  Neem_40209_f_1  80 YKWPYPSESQKQALSASTGLDSKQINNWFINQRKRH 115
                     4679*****************************985 PP
2ELK40.17.7e-143556122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    ELK qLlr Ysg++gsLkqEF+
  Neem_40209_f_1 35 ELKGQLLRRYSGCIGSLKQEFM 56
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037892.0E-113556IPR005539ELK domain
PROSITE profilePS5121310.1963555IPR005539ELK domain
SMARTSM011887.2E-83556IPR005539ELK domain
PROSITE profilePS5007112.58455118IPR001356Homeobox domain
SMARTSM003891.0E-1257122IPR001356Homeobox domain
SuperFamilySSF466897.27E-2057128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2860120IPR009057Homeodomain-like
CDDcd000861.90E-1267119No hitNo description
PfamPF059202.4E-1775114IPR008422Homeobox KN domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLPSAPGEAF DRNGSSEEDL DVNIDFIDPQ AEDQELKGQL LRRYSGCIGS LKQEFMKKRK  60
KGKLPKEARQ QLLDWWNKHY KWPYPSESQK QALSASTGLD SKQINNWFIN QRKRHWKPSE  120
DMHFMVMDAA AANQPHYYMD NVLGNSFPVD LSSMPLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15059LKQEFMKKRK
25660KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.14e-83homeobox protein SBH1
SwissprotO222991e-74LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLD3IWE98e-79D3IWE9_PRUPE; Class I KNOX homeobox transcription factor STM-like 2
STRINGevm.model.supercontig_152.562e-83(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.12e-71KNOX/ELK homeobox transcription factor