PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_40102_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 248aa MW: 26719.9 Da PI: 9.1059 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 58.4 | 1.5e-18 | 1 | 31 | 32 | 62 |
zf-Dof 32 fCkaCrryWtkGGalrnvPvGggrrknkkss 62 fCk+CrryWtkGGalrnvP+Ggg+rknk+ss Neem_40102_f_2 1 FCKTCRRYWTKGGALRNVPIGGGCRKNKNSS 31 9***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-8 | 1 | 25 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-12 | 1 | 29 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 16.032 | 1 | 29 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
FCKTCRRYWT KGGALRNVPI GGGCRKNKNS SMSAIKSSSA AKMKTVAYEF GRSSGHGNGF 60 DHEFSSTPTM WTSPQNSPLL ALLRTTQNPN INPLYLSNSV RVKEEAAVLG THVIKAEPAE 120 PVVATGALNS GTVVLDPLNQ VPSLGLCSPL WKNNQLHAQQ YYQQNGFLVG HEVQNSGMQE 180 LYQRLKSSTN YYADHSTSTV VLSNAGSSAS TSTSTILESA PFAGGELGFW NPAFSWSDHL 240 PTTNGAYP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039230.1 | 1e-107 | PREDICTED: dof zinc finger protein DOF1.1-like isoform X1 | ||||
Refseq | XP_011039231.1 | 1e-107 | PREDICTED: dof zinc finger protein DOF1.1-like isoform X2 | ||||
TrEMBL | A0A2C9URH6 | 1e-103 | A0A2C9URH6_MANES; Uncharacterized protein | ||||
TrEMBL | A0A3N7FCG5 | 1e-104 | A0A3N7FCG5_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_024126m | 1e-105 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16000 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 3e-12 | DNA binding with one finger 2.4 |