PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_398_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 302aa MW: 33669 Da PI: 8.8543

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_398_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.8	2e-07	176	229	9	63
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++k R + +rsR RK+++i+eLe+ v ++++ ++L ++ l ++ a+l e+ Neem_398_f_1 176 KMEK-RHSGQRSRVRKLQYIAELEKTVNVFQTLQSELEVRIALLLQQHASLSVEN 229 4444.99****************************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	3.75E-14	173	223	No hit	No description
SuperFamily	SSF57959	1.48E-5	175	225	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-6	180	236	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSRQAHLPPR CPFQKKPVSR PIHNPVSKES YPRHHKSSSQ SSILEDQPPW LDNLLSDSDA 60 NSVGIFHRRS ASDSVTLLNG LVDSFSDLSP LNTDKNSVAN ETCSELESAC IYGPNSPRKR 120 GNVTFAENSI VSALSESILE NPLQYVDESL CISGINPSDL KGDAYNSTGD RNAETKMEKR 180 HSGQRSRVRK LQYIAELEKT VNVFQTLQSE LEVRIALLLQ QHASLSVENS KLKQQMARLQ 240 QEKLIMESQY KSLKKEAERL KMGLAISPRS KVKAYFGSNP AAEASQAGLT WQMLDMAKLN 300 LN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445784.1	1e-164	basic leucine zipper 6
Refseq	XP_006445785.1	1e-164	basic leucine zipper 6
Refseq	XP_006485478.1	1e-164	basic leucine zipper 6
Refseq	XP_006485479.1	1e-164	basic leucine zipper 6
Refseq	XP_006485481.1	1e-164	basic leucine zipper 6
Refseq	XP_024956724.1	1e-164	basic leucine zipper 6
TrEMBL	A0A067DTK2	1e-162	A0A067DTK2_CITSI; Uncharacterized protein
TrEMBL	V4U4K4	1e-162	V4U4K4_9ROSI; Uncharacterized protein
STRING	XP_006485478.1	1e-163	(Citrus sinensis)
STRING	XP_006445784.1	1e-163	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	8e-19	bZIP family protein