PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_39691_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 227aa MW: 24625.2 Da PI: 7.0291 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 43.1 | 7.2e-14 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+f+ tGtCkyG+ CkF+H++ Neem_39691_f_1 51 DQPDCRYFMNTGTCKYGADCKFHHPK 76 6899********************96 PP | |||||||
2 | zf-CCCH | 18.1 | 4.8e-06 | 96 | 114 | 1 | 19 |
--S---SGGGGTS--TTTT CS zf-CCCH 1 yktelCrffartGtCkyGd 19 +++++C++++ +G+Ck+G+ Neem_39691_f_1 96 PGQAICSNYSMYGICKFGP 114 5789**************5 PP | |||||||
3 | zf-CCCH | 31.8 | 2.4e-10 | 114 | 135 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ +G+Ck+G++C+F H+ Neem_39691_f_1 114 PCSNYSMYGICKFGPTCRFDHP 135 7********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.549 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-11 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.803 | 95 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 111 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-5 | 112 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-7 | 114 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.361 | 114 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
METEGNIGPV SPSSIAGSNL IYSSRNPSDL STGGQVHMLA TSSPNLPERP DQPDCRYFMN 60 TGTCKYGADC KFHHPKERIA QSAASNVGPL GLPSRPGQAI CSNYSMYGIC KFGPCSNYSM 120 YGICKFGPTC RFDHPYAGYP FNYGLSLPPL SILDSPLMTH QAVPTTHSSD RSPIMSSKIP 180 NWVQNSDAES MKHQNTTTKN SDNSSEVDHS PTQSVQNSSD HSHNQSN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447662.1 | 1e-111 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_006469597.1 | 1e-111 | zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A067EWN2 | 1e-111 | A0A067EWN2_CITSI; Uncharacterized protein | ||||
STRING | XP_006469597.1 | 1e-110 | (Citrus sinensis) | ||||
STRING | XP_006447662.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 3e-29 | C3H family protein |