PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39636_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family RAV
Protein Properties Length: 357aa    MW: 41096.8 Da    PI: 8.5371
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39636_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.8e-1057104255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a+ k++g
  Neem_39636_f_1  57 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKIRG 104
                     789996.566899****999......44**********99************998 PP
2B382.25e-26180280185
                     EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f+k+ltpsdv+k++rlv+pkk+a ++                  gg+  e+++l + d+  r W+++++++++s++yv+t+GW++Fvk+++Lke+
  Neem_39636_f_1 180 FQKELTPSDVGKLNRLVIPKKYAVKYfpyitengeesnngnnnnGGV--EDIELGFFDKYMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEK 272
                     99****************************99887777655544444..8899999*************************************** PP

                     -EEEEEE- CS
              B3  78 DfvvFkld 85 
                     D+++F++ 
  Neem_39636_f_1 273 DIITFYVC 280
                     *****953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-1557113IPR016177DNA-binding domain
CDDcd000183.59E-2457114No hitNo description
SMARTSM003806.5E-2357118IPR001471AP2/ERF domain
PROSITE profilePS5103217.37257112IPR001471AP2/ERF domain
PfamPF008472.3E-557104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1757112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-30177282IPR015300DNA-binding pseudobarrel domain
CDDcd100179.75E-23179278No hitNo description
SuperFamilySSF1019361.01E-25179283IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-23180280IPR003340B3 DNA binding domain
SMARTSM010195.0E-17180290IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801180301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEDASSMVS NAKTTNVYNT EASDSNNSSF GLQQPAIKRM KTDHLHHHHN KNVSTVKFKG  60
VVPQQNGHWG AQIYANHQRI WLGTFKSERE AAMAYDSAAI KIRGGDSHRN FPWTETNNQE  120
PNFQNQYSTE AVLNMIRDGT YQPKFADYLR VQSQREDNSG ASLNQIMVHG DDKFCCRQLF  180
QKELTPSDVG KLNRLVIPKK YAVKYFPYIT ENGEESNNGN NNNGGVEDIE LGFFDKYMRP  240
WKFRYCFWRS SQSYVFTRGW NRFVKEKKLK EKDIITFYVC ECTNEAKGGQ NFFLVDVIHG  300
EGQNCNLVEM QMQLGQNVGK VFSNNSDQQK EISFKERKES ASNSAEKGFR LFGVQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2617627710100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445925.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-111RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P51e-111RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLV4U5260.0V4U526_9ROSI; Uncharacterized protein
STRINGXP_006445925.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-108RAV family protein