PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3961_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 269aa MW: 28578.4 Da PI: 8.3767 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 77 | 102 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Neem_3961_f_3 77 KTRLCNKYNTAEGCKFGDKCHFAHGE 102 8***********************96 PP | |||||||
2 | zf-CCCH | 38 | 2.8e-12 | 236 | 260 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++fa+ G C +GdrC+FaHg Neem_3961_f_3 236 FKTKLCDNFAK-GSCTFGDRCHFAHG 260 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.662 | 7 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.7 | 23 | 33 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-14 | 73 | 106 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 74 | 106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 77 | 102 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.41E-15 | 139 | 216 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.5E-13 | 145 | 215 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.7E-16 | 146 | 214 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.11 | 146 | 210 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.4E-11 | 148 | 212 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.28E-14 | 150 | 210 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-17 | 233 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.774 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-8 | 235 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-9 | 235 | 265 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-10 | 236 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDCMNSYSYI KDCKECVICT SGCPFGEGCH FLHYVPGGFK AVSQMLNLSG TPALPPSNRN 60 SAVPPSFPDG SSPPAVKTRL CNKYNTAEGC KFGDKCHFAH GEWELGRPTA PSYEDPRAMG 120 PISGRMGGRV EPPHQSLGAA ASFGASATAK ISIDAKLAGA IIGKNGVNSK QICRLTGAKL 180 SIRDHEADPN LRNIELEGTF DQIKQASAMV RELIVNVGSG SGHSMKSNSS ASSNNFKTKL 240 CDNFAKGSCT FGDRCHFAHG AEELRKSVI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595043.1 | 1e-156 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-103 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2C9UEI6 | 1e-155 | A0A2C9UEI6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012715m | 1e-156 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-52 | C3H family protein |