PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39485_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 384aa MW: 42728.5 Da PI: 8.5482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39485_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.3e-13	299	344	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq Neem_39485_f_1 299 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 344 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	293	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	296	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.93E-12	297	346	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	298	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-11	299	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-10	299	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDSSTSNTYH QQSNSGLSRF HSAPSSVLGN FMDGTEAGVK KNSFESERLF SRFMNSGGDS 60 VNNSSFQEFE VKSPVTYGNT QQTCSGLPPH YPRQSSAMEA SYELFLDHNT QVKTAVNSNL 120 IRQSSSPAGL FAKLSAQNGY ASAKDVGNYG GVNGSSGELS PSANRLRTQL SFPSRIPSSL 180 SMLSQISEIE SDSPNHGKVE NRNGDVQFYS TGFQYGSWND SSHFTESFTG IKRDQENDRK 240 LFSGAQKGEL GNCGHLLSHQ LSLPKTSAEM SAMEKFLHFQ DSVPCKIRAK RGCATHPRSI 300 AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI KDLQKQFKRQ PEKLQVFFKY 360 SEASLKSNCL TCCCTEIREV MERG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDSSTSNTYH QQSNSGLSRF HSAPSSVLGN FMDGTEAGVK KNSFESERLF SRFMNSGGDS  60
VNNSSFQEFE VKSPVTYGNT QQTCSGLPPH YPRQSSAMEA SYELFLDHNT QVKTAVNSNL  120
IRQSSSPAGL FAKLSAQNGY ASAKDVGNYG GVNGSSGELS PSANRLRTQL SFPSRIPSSL  180
SMLSQISEIE SDSPNHGKVE NRNGDVQFYS TGFQYGSWND SSHFTESFTG IKRDQENDRK  240
LFSGAQKGEL GNCGHLLSHQ LSLPKTSAEM SAMEKFLHFQ DSVPCKIRAK RGCATHPRSI  300
AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI KDLQKQFKRQ PEKLQVFFKY  360
SEASLKSNCL TCCCTEIREV MERG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490036.1	0.0	transcription factor bHLH130-like
Swissprot	Q66GR3	1e-104	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2H5PTI4	0.0	A0A2H5PTI4_CITUN; Uncharacterized protein
TrEMBL	V4SCQ7	0.0	V4SCQ7_9ROSI; Uncharacterized protein
STRING	XP_006490036.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-104	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]