PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39391_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 369aa MW: 41743.2 Da PI: 4.6048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39391_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.2e-06	302	338	4	43
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43 hn+ Er RR ++ s + L llP + ++kK++K+ + Neem_39391_f_1 302 EHNAKERVRRMKLYSTYLSLGALLPDS---GNKKVEKSVT 338 6************************...*****865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.25E-5	291	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MSSSTRNNPN HEHHNFSFPS HDSDDLWPPL EDESACLAIQ DYDIDHTLDL NIFHQENSPV 60 TGINETLLEN RIEKDNDNGL AVPFEASDNP SVVLQENSIL PTQDDKSNCE CLKLQIIHLW 120 FFTKKAYYLL KMIKQENSAI AESIIDKGLL DSWNKYHEHN SLSTTLNTSE NLCPNLEECN 180 MSLSNKSHDT SGSSDPGTLL EQENLALEPS IHKELQKNII NYSNDDNVSK YVEAPDESCL 240 LVEEGNISLP LENHESCREW ESSMLPEKES SAIAAPGNTN KGLPEKQVNA KKKDRNQSTI 300 EEHNAKERVR RMKLYSTYLS LGALLPDSGN KKVEKSVTDH YFLAFGTIFD DAKGFPKLAI 360 HKLKDWEES

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MSSSTRNNPN HEHHNFSFPS HDSDDLWPPL EDESACLAIQ DYDIDHTLDL NIFHQENSPV  60
TGINETLLEN RIEKDNDNGL AVPFEASDNP SVVLQENSIL PTQDDKSNCE CLKLQIIHLW  120
FFTKKAYYLL KMIKQENSAI AESIIDKGLL DSWNKYHEHN SLSTTLNTSE NLCPNLEECN  180
MSLSNKSHDT SGSSDPGTLL EQENLALEPS IHKELQKNII NYSNDDNVSK YVEAPDESCL  240
LVEEGNISLP LENHESCREW ESSMLPEKES SAIAAPGNTN KGLPEKQVNA KKKDRNQSTI  300
EEHNAKERVR RMKLYSTYLS LGALLPDSGN KKVEKSVTDH YFLAFGTIFD DAKGFPKLAI  360
HKLKDWEES

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	2e-07	bHLH family protein