PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3929_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 538aa    MW: 58740.1 Da    PI: 7.7275
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3929_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86e-112425799
                   TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +r++lt+GW++Fv++++L +gD++vF   + +++ l+v+++r+
  Neem_3929_f_1  2 RRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 42
                   789************************..4488999****997 PP
2Auxin_resp116.32.7e-38133216183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eFvvk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+
  Neem_3929_f_1 133 AATFAANGQPFEVVYYPRASTPEFVVKASAVRSAMQIQWCSGMRFKMAFETEDSSRISWfMGTISAVQVADPICWPNSPWRLLQ 216
                    678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.138143IPR003340B3 DNA binding domain
CDDcd100171.20E-7141No hitNo description
Gene3DG3DSA:2.40.330.105.6E-13246IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-8242IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-10246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-44777IPR015300DNA-binding pseudobarrel domain
PfamPF065074.1E-33133216IPR010525Auxin response factor
PROSITE profilePS5174520.171452532IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
PRRHLLTTGW SNFVNQKKLV AGDSIVFLRA ENGDLCVGIR RAKNNQKKLV AGDSIVFLRA  60
ENGDLCVGIR RAKKGGIGGG SDYSIGWNSG GGNCGFPFGG YSAYMREDEN KLPRRHSNTD  120
LRGRVRAESV VEAATFAANG QPFEVVYYPR ASTPEFVVKA SAVRSAMQIQ WCSGMRFKMA  180
FETEDSSRIS WFMGTISAVQ VADPICWPNS PWRLLQVAWD EPDLLQNVKR VSPWLVELVS  240
NIPAIHLSPF SPPRKKLRLP EHPDFSLINP LPMPSFSRNP LMNSSPLRCI SDNIPAGIQG  300
ARHAQYGLSS SDLHFNKLQS GLFPLGSQQL ENIARPARIP SSNFLSETGN SDSISCLLTM  360
GNPTQSYKDN SEVKTPHILL FGQLILPQQN SSQSCSGDTI GNSLSDGNPE KTTISSDGSG  420
SAVHQNGLLE NSSDGGSPWC KDHQKSDLGL ETGHCKVFME SEDVGRTLDL SVLGSYEELY  480
GKLANMFGIG SSEMFSNVLY RDAAGSVKHT GDEPFSEFLK TARRLTILTD SGSDNVGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-241237218388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436433.10.0auxin response factor 16
RefseqXP_006485698.10.0auxin response factor 16
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067E0E60.0A0A067E0E6_CITSI; Auxin response factor
STRINGXP_006485698.10.0(Citrus sinensis)
STRINGXP_006436433.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]