PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_39218_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 292aa MW: 31908.5 Da PI: 9.9503 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.2e-06 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Neem_39218_f_1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.3 | 5.6e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s++k H +++ Neem_39218_f_1 137 WKCEKCSKKYAVQSDFKAHAKVC 159 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.59E-7 | 60 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-6 | 60 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 4.1E-5 | 61 | 83 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 102 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 125 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.59E-7 | 132 | 157 | No hit | No description |
SMART | SM00355 | 76 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MPVDLENSST ASGEASVSFS SKKKAPPKTT IKKKRSLPGT PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPETSCV HHEPSRALGD 120 LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DFKAHAKVCG TKEYKCDCGS KFSRKFAGDF 180 SRLSMLSYLI PSRRDSFITH RAFCDMLTKE GARAPPNQDE GLVDTDSDSD PKVQPVDLSS 240 PNPPPAAAPA PAPAAPPPAV PQASDAISSS VSPVQTRGNL SSLSVLVLDL GL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-30 | 133 | 213 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-30 | 133 | 213 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425718.1 | 1e-136 | protein indeterminate-domain 2 | ||||
Refseq | XP_006466759.1 | 1e-136 | protein indeterminate-domain 2 | ||||
Refseq | XP_006466760.1 | 1e-136 | protein indeterminate-domain 2 | ||||
Refseq | XP_006466761.1 | 1e-136 | protein indeterminate-domain 2 | ||||
Refseq | XP_024036000.1 | 1e-136 | protein indeterminate-domain 2 | ||||
Refseq | XP_024036001.1 | 1e-136 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-119 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | V4RVX7 | 1e-135 | V4RVX7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466759.1 | 1e-136 | (Citrus sinensis) | ||||
STRING | XP_006425718.1 | 1e-136 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-103 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|