PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39198_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 320aa MW: 35467.4 Da PI: 7.8143

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39198_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.2	1.9e-28	56	107	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLG +AtPk+i+++m+vkgLtl h+kSHLQkYRl Neem_39198_f_1 56 KPRLRWTADLHDRFVDAVTQLG---EATPKAIMRTMNVKGLTLFHLKSHLQKYRL 107 79*****************4...79*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.524	53	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-28	53	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.36E-14	56	109	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-21	56	108	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-8	58	106	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-16	126	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MIDELSLNCE KFMYTARMIQ GREGVHEEIH GYHHIQNLNR RGGIGEACVV MTSDPKPRLR 60 WTADLHDRFV DAVTQLGEAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKEMGDSPK 120 DGRAFEVKEA LRAQMEVQSK LHLQVEAEKH LQIRQDAQRR YLAMLDRACK MLSDQFIGGT 180 VVNADSEKCQ GLGTKMPRTY ILDQLGFYTA QSLDVAEVHC LEDDVLPNLH TQRADCSTES 240 CLTSHESSGG LKLKGSPGAG KNRILSLDST TATLLWGEAK IGTQEINLAQ VNPQGITGSL 300 EGGCRQMEKA LGSTKNGSFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-15	56	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-15	56	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-15	56	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-15	56	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467240.1	1e-151	protein PHR1-LIKE 3-like
TrEMBL	A0A2H5N666	1e-149	A0A2H5N666_CITUN; Uncharacterized protein
TrEMBL	V4TRR7	1e-149	V4TRR7_9ROSI; Uncharacterized protein
STRING	XP_006467240.1	1e-150	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17085	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-54	G2-like family protein