PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3898_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 595aa    MW: 68275 Da    PI: 5.5152
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3898_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.5e-2499185191
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +fY+eYA++vGF +++++s++sk++g++++ +  Cs+ g+r e+ ++     + r+  +tgCka l++k+++d+kw+++++ +eHnHe++p
  Neem_3898_f_1  99 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSRPESGTT----TNLRSCPKTGCKAGLHMKRRQDEKWVINSFIKEHNHEICP 185
                    5*****************************************99888....889999*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2199185IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.223387423IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-6393421IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-5398425IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MEIDLEVPSN EQDKLENVSN VNDDTMDGMS GIDVEDRDRG SPRISEPIEE ECGPSASERV  60
TGGGNQLDTN IVRTDVLHKG VICEPQNGLE FESKEVAYSF YREYARSVGF GITIKASRRS  120
KKSGKFIDVK IACSRFGSRP ESGTTTNLRS CPKTGCKAGL HMKRRQDEKW VINSFIKEHN  180
HEICPDDCYL AIRGRNKQSS IIACQKKGLQ LAFDDGELQM IKCIYRSWTD EQFEKRWLKM  240
VDKFELRENE WVQSLYEDRK KWVPTYLQNT VLVGMSTTER SESVASFFDK YMNREATFKE  300
FFEQYKEFLQ DRYEMEAEAE SETRNKQPGL ISLSAFEKQM STIYTDTIFK KFQLEVLGVV  360
SCHLQKERED GTTVVFRIDD FEERQNFYVA WNEAEMDINC LCHSFEYRGF LCKHAILVLQ  420
MSGFSDIPSN YILKRWTKDA KISQAVEANS FSAQGFLDIE EENRGNSVAK SSKKKKMPKK  480
RKVRSEPGRI IIGLQDNCQQ LDQMNSRAHV LNNCYVPQQE MQEMETGSRA PTLDSYYHSQ  540
QSMQGMGQLN SISPVRDGYY GNQPGMQGLG QLGFKAPTMP GCFDIQDSLQ DIVCI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475481KMPKKRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386794.10.0protein FAR1-RELATED SEQUENCE 2-like isoform X2
RefseqXP_024038179.10.0protein FAR1-RELATED SEQUENCE 2 isoform X2
RefseqXP_024038181.10.0protein FAR1-RELATED SEQUENCE 2 isoform X4
RefseqXP_024955801.10.0protein FAR1-RELATED SEQUENCE 2-like isoform X4
SwissprotQ3EBQ31e-110FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A2N9EY901e-159A0A2N9EY90_FAGSY; Uncharacterized protein
STRINGXP_006481372.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.32e-92FAR1-related sequence 2
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]