PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_388_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 371aa MW: 41959.8 Da PI: 8.0887 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.8 | 3.9e-32 | 123 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + + Neem_388_f_1 123 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGElGKDR 219 89***************************966778999*************************************************6669999999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l++ ++r+ Neem_388_f_1 220 LYIDWRRR 227 99999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-42 | 114 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.37E-30 | 120 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-26 | 121 | 210 | No hit | No description |
Pfam | PF02362 | 1.3E-29 | 123 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-23 | 123 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.776 | 123 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEFGSNREGF CDEDEMGKLN KLHFSYSSPS SPSSSSHYNK TQLLPPLSNN RWEQAQIFDN 60 QHQMGSWLGH RYDLAAAAAA VEDNSRSNEE AASTKVDLMD TSPRNDEDVR SGSASAIEKE 120 HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSTNEKGL LLNFEDRNGK PWRFRYSYWN 180 SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR GVGELGKDRL YIDWRRRPDA PEQAASFPLQ 240 HRLSFHRSIP WNPLLMRPPV AAMGRDQSQF SQMNNLYNRN SYYNGKAAAK RLRLFGVNMD 300 CPITESDECD ILSSTTIQHA TMTIQPSQVS SSSSQSPLPL RLYNGTSLPS ALPPFDFLNK 360 GKASMSFDSN V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-66 | 118 | 228 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-66 | 118 | 228 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470360.1 | 1e-130 | PREDICTED: B3 domain-containing protein Os03g0120900-like | ||||
TrEMBL | A0A0D2MKI1 | 1e-129 | A0A0D2MKI1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G073600.1 | 1e-130 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 4e-70 | B3 family protein |