PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3839_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 1067aa    MW: 116715 Da    PI: 4.85
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3839_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-193783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
    Neem_3839_f_3 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding65.87.9e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
    Neem_3839_f_3  89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding48.51.9e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
    Neem_3839_f_3 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713283IPR017930Myb domain
SuperFamilySSF466897.18E-163389IPR009057Homeodomain-like
SMARTSM007171.0E-153685IPR001005SANT/Myb domain
PfamPF002492.2E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-223890IPR009057Homeodomain-like
CDDcd001672.15E-144083No hitNo description
PROSITE profilePS5129433.52184139IPR017930Myb domain
SuperFamilySSF466899.73E-3286182IPR009057Homeodomain-like
SMARTSM007176.5E-2088137IPR001005SANT/Myb domain
PfamPF002492.9E-1989135IPR001005SANT/Myb domain
CDDcd001672.00E-1791135No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2891139IPR009057Homeodomain-like
SMARTSM007172.2E-15140188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-21140190IPR009057Homeodomain-like
PROSITE profilePS5129419.563140190IPR017930Myb domain
PfamPF002491.8E-13141184IPR001005SANT/Myb domain
CDDcd001674.94E-12143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MESDRVISTP SDGLSDGGQR MRPLHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLE QFQGLPLVGH QNQPMPSSSS RVQSSGDESA AKGAAEAEEI  240
SECSQDSAVV GHSHSAGNAV LHTREQFILT DESQQGKDQS SSPASCSEQY YTSLEDVTFT  300
IPEIPCEVDC SSKFPEQNFA HDAGTFANRD YQFNLQDLAN LSSIELGHQS SGLSAHCINS  360
HESQELVNVP FQSSVGLSVP SSIGNPAAGS AKPEHMLISD EECCRVLFVE AMKDGCFSLE  420
NFTQGLNMID SSLCRSLDIQ ISERDTTSSA QTYCPSKPEV LGTSCSQSFL SPPTLFSGDD  480
GALVYGKESS QINCQSYVTQ EQEFNTSGHD GFIYTNESAN SPCDNGTDNT SLQEPSYLAK  540
DSFKLVPVNS FGSESDVVIP CSSVDVKPEA QTEQEDAGAL CYEPPRFPSL DIPFFSCDLI  600
QSGSDMQQEY SPLGIRQLMS SMNCVTPFRL WDSPSRDGSP EAVLKSAAKT FTGTPSILKK  660
RHRDLLSPLS DRRNDKKLET DVTSCLARDF SRLDVMFDET SKATVLSPSS NQKRSFGSFI  720
EDKENLGYAV GGGGQEKDKN QSAVMEDRTS DRDGDGGNSL ANIKQKTVDI DSKTKIDADA  780
DAAAEIGKKP AGVLVEHNMN DLLFSPDQVG PKVRALGSIT RTPRNQNCKN CGATSNLDVT  840
SEQSPGATCS PAVCKKNNDS NSGTVASVQP IPSLATTGDT VVNAGNDVGT ENYSIFGETP  900
FKRSIESPSA WKSPWFINSF VPGPRIDTEI TIEVAASASN SSLPFFMKDI GYFMSPGDRS  960
YDALGLMKQL SEHTAAAYAD ALEVLGNESS EVIVNERNSQ NTSMDQDINH APENEQESSH  1020
LASNVMMERR ILDFSECGTP RKGTENRKSS AAVSFSSPSS YLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-71371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-71371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450634.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_024034229.10.0transcription factor MYB3R-1 isoform X1
TrEMBLV4WBV50.0V4WBV5_9ROSI; Uncharacterized protein
STRINGXP_006450634.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4