PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_382_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 253aa    MW: 27817.3 Da    PI: 6.7081
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_382_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.13.5e-39451461101
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela+
  Neem_382_f_5  45 PCGACKFLRRKCITGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAM 141
                   7***********************9989********************************************************************* PP

        DUF260  97 lkeel 101
                   ++++l
  Neem_382_f_5 142 VQTQL 146
                   99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.67844146IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3845143IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSDRQPEYST SETRRRGIGK RATTVHPPED EPVSAPAPAP SPAAPCGACK FLRRKCITGC  60
IFAPHFGSDQ GAARFAAVHK VFGASNVSKL LLHIPVNRRH DAVVTISYEA QARLSDPVYG  120
CVSTILALQQ QVASLQAELA MVQTQLINSR FAMVNALQTS QQQPQHPQQL QHVALLQQQQ  180
PAYSNSSSAS TNFINMNNFA SNLDFVAETV PSCQSMEPLH EISRPAPDDE EDEEESQIPV  240
MFANDQILRR RLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-38401606125LOB family transfactor Ramosa2.1
5ly0_B6e-38401606125LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443492.11e-115LOB domain-containing protein 20
RefseqXP_006479165.11e-115LOB domain-containing protein 20
SwissprotQ9SRV34e-79LBD20_ARATH; LOB domain-containing protein 20
TrEMBLV4TTG51e-114V4TTG5_9ROSI; Uncharacterized protein
STRINGXP_006479165.11e-115(Citrus sinensis)
STRINGXP_006443492.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-63LOB domain-containing protein 20