PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_38209_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 28630.9 Da PI: 4.7815 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3.1e-19 | 174 | 207 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C+t kTp+WR gp g+ktLCnaCG++y++ + Neem_38209_f_1 174 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR 207 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-13 | 168 | 218 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-15 | 171 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-15 | 172 | 205 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.622 | 172 | 204 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.07E-15 | 173 | 224 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 174 | 199 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.9E-17 | 174 | 207 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFCMEARAL KSRLRRELSF IKSTQQVFLE DILCGTGISA VSTEDFSVDD LLDFSNGDFE 60 DGSAEEEDEN EKDSVSVSSS RDRVDDDNNS NSASFSSDQT LLVDDFAELE WVSQFVDDSS 120 CSEFSLLYPN YAKTLSEPAE KPVLVNTSCF NEPAAKKAKK KPTVQGGGLF QRRCSHCQTQ 180 KTPQWRTGPL GPKTLCNACG VRYKSGRLFP EYRPACSPTF SVDMHSNSHR KVLEMRKKKE 240 MTEPEVGMTR MVQSF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236855.1 | 2e-88 | PREDICTED: GATA transcription factor 5-like | ||||
Refseq | XP_008236856.1 | 2e-88 | PREDICTED: GATA transcription factor 5-like | ||||
TrEMBL | A0A314Y1V4 | 5e-83 | A0A314Y1V4_PRUYE; GATA transcription factor | ||||
STRING | XP_008236855.1 | 6e-88 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5739 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 3e-47 | GATA transcription factor 3 |