PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_38040_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 314aa MW: 34413.1 Da PI: 4.687 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.8 | 4.1e-37 | 26 | 80 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Neem_38040_f_1 26 SCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 80 7***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-28 | 11 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.714 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-31 | 26 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MNEVYEAQEI LVMERTWKPN VEISPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT 60 KGGSLRNVPV GGGCRKNRRG KSVRLSTDGG SGVSSKSLGY VGTGSSENGS RNFVGNSSSI 120 TNNNSSIMQQ QDGSHIDLAL VYANFLNQQP EPKPAGSFEM PELPEFDPSV EFSSMVSENL 180 ETSVQLPEEN HNGLVGSLSF SDLSAAAAAA HLIRDTDQIY YNNIIQDHGI QPCSSTTHEA 240 SNNIQAAVLP PLPREEILWL NSQMMMNQSL QEAGAAPQEP ILGGPENLAQ DPNNLLFGNW 300 SPFDFSSDDT FSKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430054.1 | 1e-141 | dof zinc finger protein DOF3.5 | ||||
Refseq | XP_024955880.1 | 1e-140 | dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A2H5MY02 | 1e-139 | A0A2H5MY02_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UUG9 | 1e-139 | V4UUG9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006481859.1 | 1e-140 | (Citrus sinensis) | ||||
STRING | XP_006430054.1 | 1e-140 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9141 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 6e-52 | Dof family protein |