PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38040_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 314aa    MW: 34413.1 Da    PI: 4.687
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38040_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.84.1e-372680761
          zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Neem_38040_f_1 26 SCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 80
                    7***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-281179IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7142579IPR003851Zinc finger, Dof-type
PfamPF027012.5E-312679IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNEVYEAQEI LVMERTWKPN VEISPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT  60
KGGSLRNVPV GGGCRKNRRG KSVRLSTDGG SGVSSKSLGY VGTGSSENGS RNFVGNSSSI  120
TNNNSSIMQQ QDGSHIDLAL VYANFLNQQP EPKPAGSFEM PELPEFDPSV EFSSMVSENL  180
ETSVQLPEEN HNGLVGSLSF SDLSAAAAAA HLIRDTDQIY YNNIIQDHGI QPCSSTTHEA  240
SNNIQAAVLP PLPREEILWL NSQMMMNQSL QEAGAAPQEP ILGGPENLAQ DPNNLLFGNW  300
SPFDFSSDDT FSKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430054.11e-141dof zinc finger protein DOF3.5
RefseqXP_024955880.11e-140dof zinc finger protein DOF3.5
TrEMBLA0A2H5MY021e-139A0A2H5MY02_CITUN; Uncharacterized protein
TrEMBLV4UUG91e-139V4UUG9_9ROSI; Uncharacterized protein
STRINGXP_006481859.11e-140(Citrus sinensis)
STRINGXP_006430054.11e-140(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.16e-52Dof family protein