PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3769_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 369aa    MW: 40038.8 Da    PI: 6.5787
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3769_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-062050434
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                   + C++++   +  fC+ +++ lC +C + +H
  Neem_3769_f_1 20 KPCDTCKAAAAAVFCRVDSVSLCLNCDSRIH 50
                   67******99*******************99 PP
2zf-B_box25.62.5e-0862107339
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Htv 39 
                     ++C+ +e+ ++   C+ +   lC +C   +H+          H v
  Neem_3769_f_1  62 VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSAnplarrherHPV 107
                    689****************************965788888444554 PP
3CCT70.63.9e-24295338144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Neem_3769_f_1 295 REAKVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRT 338
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7121764IPR000315B-box-type zinc finger
SMARTSM003361.5E-81764IPR000315B-box-type zinc finger
CDDcd000211.75E-52164No hitNo description
PROSITE profilePS5011910.40960107IPR000315B-box-type zinc finger
PfamPF006432.0E-662107IPR000315B-box-type zinc finger
CDDcd000218.79E-763109No hitNo description
SMARTSM003363.2E-865107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.529295337IPR010402CCT domain
PfamPF062035.2E-18295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGIELHNVKG IAGGWSVGAK PCDTCKAAAA AVFCRVDSVS LCLNCDSRIH CVNKLAYRHE  60
RVWMCEVCEQ APAAVTCKAD AAALCVTCDN DIHSANPLAR RHERHPVEPF YASADSIVKS  120
SALNLLVPTD QNGGSDFSGT CPTEGVDAGS WLLPNSKLGA ENTPEMKSGD LFFSEMDPFI  180
DFEYQNSFQN HHSAGMDSVV PVQTTKPAPI PVGNSENCFD IDFCRSKLSS FSYQTQSLSQ  240
SVSSSSLDVG VVPDGNCMSD TSFPFGGNMS SGTDPNVSIS ATATNQASQL CGIDREAKVL  300
RYREKRKNRK FEKTIRYHSR KAYAETRPRI KGRFAKRTDA DTEVDRLYNS AASAAAFMAD  360
TQYGVVPSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474138.10.0zinc finger protein CONSTANS-LIKE 5
RefseqXP_024033868.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-123COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLS5TE390.0S5TE39_LITCN; CONSTANS-like protein
STRINGXP_006453443.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-120CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]