PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_37611_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26600.6 Da PI: 5.0149 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f ta eAa+a+++a+ kl+g Neem_37611_f_1 103 HYRGVRRRP-WGKYAAEIRDP---NrKGIRVWLGTFETAIEAARAYDHAAFKLRG 153 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-30 | 102 | 161 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 102 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-38 | 103 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-13 | 103 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-23 | 103 | 163 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.816 | 103 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MATPEEASTL ELISQFLLTD FASMDNFISS LNLYTSHNTN FDKATADISV SDYLNEPELN 60 QTDQSSSQSK SLSTLSTIPA AADFDLSSNV NPVKGLDAGK EKHYRGVRRR PWGKYAAEIR 120 DPNRKGIRVW LGTFETAIEA ARAYDHAAFK LRGRKAILNF PLEVGNSNSA ESESQVNFGK 180 RRKYEEADTV ERKAVKEAPE ETVTETVTPA GVGQLTPSSW TGFWDDVKGM FTVPPLSPIL 240 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-29 | 100 | 171 | 2 | 70 | ATERF1 |
3gcc_A | 4e-29 | 100 | 171 | 2 | 70 | ATERF1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00572 | DAP | Transfer from AT5G61600 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286001.1 | 2e-72 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A067D6A5 | 7e-69 | A0A067D6A5_CITSI; Uncharacterized protein | ||||
STRING | XP_006490015.1 | 1e-69 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 7e-57 | ethylene response factor 104 |