PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_37590_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 133aa MW: 15191.7 Da PI: 10.5811 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.1e-10 | 57 | 93 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E +++++a + +G++ Wk++a+ + +R+++++ Neem_37590_f_1 57 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVE 93 6*****************99.*********.****9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.012 | 53 | 106 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0025 | 54 | 102 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-11 | 54 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 57 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-9 | 57 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-5 | 58 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MAPTRKSRSV NKRYSNEVSP GKDMVNSSKA KQKLCFNMLT MKFSSLKKKL SDKLGPQWSK 60 GELQRFYEAY RNYGKDWKKV AAQVRNRSAE MVEALYNMNR AYLSLPEGTA SVVGLIAMMT 120 DHYNVLVRLD IGV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898881.1 | 1e-57 | protein ALWAYS EARLY 2 | ||||
Swissprot | Q6A331 | 4e-47 | ALY1_ARATH; Protein ALWAYS EARLY 1 | ||||
TrEMBL | A0A2K3NNN3 | 1e-56 | A0A2K3NNN3_TRIPR; Always early 2-like protein | ||||
STRING | evm.model.supercontig_48.70 | 5e-57 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21251 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 7e-38 | DNA binding |
Publications ? help Back to Top | |||
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