PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3752_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 572aa    MW: 62766.8 Da    PI: 6.1566
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3752_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.39.4e-26123224199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++         ++ +  tl+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++s+
  Neem_3752_f_1 123 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqADPPVQ--TLSVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKFVNQKKLIAGDSVVFM--RDSG 214
                    89*********************999****995444444..9************************************************..5699 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++++v+++r+
  Neem_3752_f_1 215 GKMFVGLRRS 224
                    *******986 PP

2Auxin_resp80.53.8e-27254335383
     Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    ++a  + +FevvY+Pra++++F+v++e v +a++v +++GmR+km +etedss+ ++ +Gtv++ s  d   W +S+W +L+
  Neem_3752_f_1 254 ERAVLGLPFEVVYYPRAGWADFIVNAEVVDAAMRVLWTAGMRVKMVVETEDSSRMTWvQGTVTAASVPDRGPWCGSPWGMLE 335
                    56667889**********************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-29117232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-34122225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.872123225IPR003340B3 DNA binding domain
CDDcd100171.41E-20123223No hitNo description
PfamPF023623.1E-23123224IPR003340B3 DNA binding domain
SMARTSM010193.5E-22123225IPR003340B3 DNA binding domain
PfamPF065071.3E-24253334IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MPLQHHSSPS EPCAVDPRVW RSCAGSSVQI PTVNSRVYYF PQGHVEQSCP SIAVSVSKPV  60
IPCVISHVDF MADPITDQVF AKVLLSPITA VEPSRNFLDQ QQQRQRHPQR GNGSVDENGV  120
VAFAKILTPS DANNGGGFSV PRFCADSIFP PLNYQADPPV QTLSVTDIHG AVWEFRHIYR  180
GTPRRHLLTT GWSKFVNQKK LIAGDSVVFM RDSGGKMFVG LRRSVKYGNN GDGATARWRE  240
QIGIKAESVV EAVERAVLGL PFEVVYYPRA GWADFIVNAE VVDAAMRVLW TAGMRVKMVV  300
ETEDSSRMTW VQGTVTAASV PDRGPWCGSP WGMLEVTWDE PEILQNAKRV SPWQIEFVSP  360
TRPLHTTFPQ AKRPKFPQNC GSVTDGEEEI FFPVTGLTNS TVGYLDPSLL NYNTFPAGMQ  420
GARQNPFSLF SLSNFISENN HQMCSDGTVG NHMVPKLRRV STELNIGSSQ SDNLSPDSHS  480
SVHSFGAELG NQGCNSTKVG VSSIQLFGKI IHMKQPIEGG FDDVCPEDDG GKGFNGREDV  540
NVPLDLSLTY TELLNRFGMQ SGSEVEAEAC TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-67135637388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434091.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A067GQ760.0A0A067GQ76_CITSI; Auxin response factor
STRINGXP_006434090.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-178auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]