PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_3752_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 572aa MW: 62766.8 Da PI: 6.1566 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 81.3 | 9.4e-26 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+ltpsd+++ g +++p+ +a+++ ++ + tl+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+ ++s+ Neem_3752_f_1 123 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqADPPVQ--TLSVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKFVNQKKLIAGDSVVFM--RDSG 214 89*********************999****995444444..9************************************************..5699 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++++v+++r+ Neem_3752_f_1 215 GKMFVGLRRS 224 *******986 PP | |||||||
2 | Auxin_resp | 80.5 | 3.8e-27 | 254 | 335 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++a + +FevvY+Pra++++F+v++e v +a++v +++GmR+km +etedss+ ++ +Gtv++ s d W +S+W +L+ Neem_3752_f_1 254 ERAVLGLPFEVVYYPRAGWADFIVNAEVVDAAMRVLWTAGMRVKMVVETEDSSRMTWvQGTVTAASVPDRGPWCGSPWGMLE 335 56667889**********************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.54E-29 | 117 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-34 | 122 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.872 | 123 | 225 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.41E-20 | 123 | 223 | No hit | No description |
Pfam | PF02362 | 3.1E-23 | 123 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-22 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-24 | 253 | 334 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 572 aa Download sequence Send to blast |
MPLQHHSSPS EPCAVDPRVW RSCAGSSVQI PTVNSRVYYF PQGHVEQSCP SIAVSVSKPV 60 IPCVISHVDF MADPITDQVF AKVLLSPITA VEPSRNFLDQ QQQRQRHPQR GNGSVDENGV 120 VAFAKILTPS DANNGGGFSV PRFCADSIFP PLNYQADPPV QTLSVTDIHG AVWEFRHIYR 180 GTPRRHLLTT GWSKFVNQKK LIAGDSVVFM RDSGGKMFVG LRRSVKYGNN GDGATARWRE 240 QIGIKAESVV EAVERAVLGL PFEVVYYPRA GWADFIVNAE VVDAAMRVLW TAGMRVKMVV 300 ETEDSSRMTW VQGTVTAASV PDRGPWCGSP WGMLEVTWDE PEILQNAKRV SPWQIEFVSP 360 TRPLHTTFPQ AKRPKFPQNC GSVTDGEEEI FFPVTGLTNS TVGYLDPSLL NYNTFPAGMQ 420 GARQNPFSLF SLSNFISENN HQMCSDGTVG NHMVPKLRRV STELNIGSSQ SDNLSPDSHS 480 SVHSFGAELG NQGCNSTKVG VSSIQLFGKI IHMKQPIEGG FDDVCPEDDG GKGFNGREDV 540 NVPLDLSLTY TELLNRFGMQ SGSEVEAEAC TL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-67 | 1 | 356 | 37 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434091.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A067GQ76 | 0.0 | A0A067GQ76_CITSI; Auxin response factor | ||||
STRING | XP_006434090.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-178 | auxin response factor 17 |