PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37403_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 555aa    MW: 64289.1 Da    PI: 6.289
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37403_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.4e-30107192187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r+++++++r++++kkplW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Neem_37403_f_1 107 RWPRQETLTLLEIRSRLDSKFREANQKKPLWDEVSRIMaEEHGYHRSEKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 192
                     8*************************************999*****************************98..55667*******85 PP
2trihelix53.56.3e-17411485174
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                     rW + e+  Li++ +++e+++++ g ++++ Wee+++km++ g+ rs+++ kekwen+++++k  +  +kkr+++
  Neem_37403_f_1 411 RWDEAETSSLIQIITSLESEFEKsGYSDENIWEEIAAKMASFGYYRSAIEFKEKWENMQMYFKMATGFNKKRRED 485
                     8*********************846799**************************************999998544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.16104167IPR001005SANT/Myb domain
PfamPF138378.5E-21106193No hitNo description
CDDcd122031.44E-19107172No hitNo description
PROSITE profilePS500906.818107165IPR017877Myb-like domain
PROSITE profilePS500906.876404469IPR017877Myb-like domain
SMARTSM007172.1408471IPR001005SANT/Myb domain
PfamPF138371.2E-14410486No hitNo description
CDDcd122035.89E-16411476No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MADQYGLPDL GHLATGRTHF PANQQASEPY FFHRNLAQSS HNDTIMLSEM VLPGHLVRFG  60
HDNFTTTASA SASAVAHPAM GTANSAKYAL EMDTGWNNIG NEGGNCRWPR QETLTLLEIR  120
SRLDSKFREA NQKKPLWDEV SRIMAEEHGY HRSEKKCREK FENLYKYYKK TKEGKAGRQD  180
GKHYRFFRQL EALYGETSNN QNSVSESPLD QNINLPYQTP NNTTNQENLE NQEAFQEQKL  240
STESLSFSNT SEFETASSGN NDDDLSAIAF MMNQKSMEKN KGINESQSGG RAKRSWKAKV  300
KEFVDAQMQK LMESQEAWME RMLKTIEDRE QERLSKEEEW RKQEVARFDR VHDFWAKERA  360
WVEARDAALM EALKKFTGRE LEVSSSITRG TQSKNRAKNE KEIANNATND RWDEAETSSL  420
IQIITSLESE FEKSGYSDEN IWEEIAAKMA SFGYYRSAIE FKEKWENMQM YFKMATGFNK  480
KRREDLKTGR SNYHQTSEYY HHGHEITKER LESMELLPSN TSSYAGTEAH SSCFPFLIND  540
LGQQQLWEKE KNQHN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840631e-50AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144191e-50AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436672.10.0trihelix transcription factor PTL
RefseqXP_006492187.10.0trihelix transcription factor PTL-like
TrEMBLA0A2H5PJY70.0A0A2H5PJY7_CITUN; Uncharacterized protein
TrEMBLV4T9I20.0V4T9I2_9ROSI; Uncharacterized protein
STRINGXP_006492187.10.0(Citrus sinensis)
STRINGXP_006436672.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-107Trihelix family protein