PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37331_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 202aa    MW: 23057.4 Da    PI: 9.0754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37331_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.5e-171171981698
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + p +fa+++ + + +    +l+d+ gr+W +k+ y+++ g+  ++ltkGW+eF + n +  gD++vF+l++ ++  l+v+vf 
  Neem_37331_f_1 117 NYAPATFANKYVSRSVQ--SAKLQDSCGREWPMKI-YWRSTGSagFYLTKGWNEFSEINVIHKGDICVFELIRMEDVLLKVSVFH 198
                     377999**999666556..59**************.666555558***************************9888889999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-16104199IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-14117198IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266120200IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-14120196IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-12133197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MANLQELWKG LMILEKIVRK FGDELSAVAK LRVPNGRVGR VLDTFVVFEY IKHSTFDLLV  60
FDTTACEIDY PPTQNDKQNS SEQDEIKNEN SVEILGSTTA NKKRTSPVKK KNHKAKNYAP  120
ATFANKYVSR SVQSAKLQDS CGREWPMKIY WRSTGSAGFY LTKGWNEFSE INVIHKGDIC  180
VFELIRMEDV LLKVSVFHAT IE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2305334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-13related to vernalization1 1