PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3728_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SBP | ||||||||
Protein Properties | Length: 551aa MW: 59805.1 Da PI: 7.4437 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.4 | 3.7e-42 | 177 | 253 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rhkvCevhska++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Neem_3728_f_2 177 CQVYGCNKDLSSSKDYHKRHKVCEVHSKAAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQD 253 **************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 32.701 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-33 | 174 | 238 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.22E-38 | 175 | 254 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-32 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MESWSYVSGG QESVANDTIS RCDSSSRSKN SLMGWELSTP RRFGNNILVS DQEAIHNQSF 60 GKFSGQESVG KRLPNDSVRD VSGSKYGSGR VMNPIIPTPN KSFGEDDSTS RLSNSAVDSN 120 SSHDSFLIDL NLGRFVDQRD LHSTKFSHGA PILSSSESST PPKRVRLSAI SLHAAFCQVY 180 GCNKDLSSSK DYHKRHKVCE VHSKAAKVIV NGIEQRFCQQ CSRFHLLAEF DDGKRSCRKR 240 LAGHNERRRK PQDNRSQSAS ADSKFEGTKL TMSSFVCQDI LPGGLFHPQK CGTNDWFKSI 300 KIEEGTAYNS LSATPITNGN LHYKSFSPHY GFEKVVPSFH GNEANTAAES IFSFNSTRHP 360 HDMGGPNSGS SLLFQETTMG SEDFTVFDTA STIQGLSGIA GSGCALSLLS PKSQNSSSHL 420 SGIPAAHALV IPGSSTHFNI GQVSEKLPGG SSQASTGGVS NKFSSTGNNS VEGSNLGSIL 480 MSDSSDAANF DIGNGIYRGL DFMNPKDRLS CEDGATIDLL QLSSQLQRVE HQRQSMEVKD 540 ENDSFCWLRI T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 176 | 250 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 5e-32 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 5e-32 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477709.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
TrEMBL | A0A067FHU9 | 0.0 | A0A067FHU9_CITSI; Uncharacterized protein | ||||
STRING | XP_006477709.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14770 | 9 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 3e-45 | SBP family protein |