PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_36966_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 237aa MW: 27429.5 Da PI: 7.3033 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.8 | 6.7e-27 | 73 | 159 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YAk +GFsvrk+ ++sk +g++++r+++Cs+eg+r++++++ ++ +++r+etrtgC a++ ++++ dgk++vt++e +HnH+ Neem_36966_f_1 73 RFYNRYAKLLGFSVRKDWANRSKIHGQVVSRKYTCSREGHRRKDRRD-TNVKKHRKETRTGCLAHMIITRQPDGKYRVTHFEANHNHD 159 5*******************************************999.99999**********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-24 | 73 | 159 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNKDDSDLGS PHDMIMDNRF QTSNELDLNV EQGSRSPIVV NATLSTLSSK DDANVDGILR 60 IGTEFESDEH AYRFYNRYAK LLGFSVRKDW ANRSKIHGQV VSRKYTCSRE GHRRKDRRDT 120 NVKKHRKETR TGCLAHMIIT RQPDGKYRVT HFEANHNHDN IDPNNAQTFL LQKELFVDQA 180 PEIGLPNNLE LQSNTDSDLM SRRFEVRDAL DFLAIDYDIS LRSERVRNMK EDAPKCS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445005.1 | 1e-124 | protein FAR1-RELATED SEQUENCE 12 isoform X3 | ||||
Refseq | XP_006491138.1 | 1e-124 | protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
Refseq | XP_015389745.1 | 1e-123 | protein FAR1-RELATED SEQUENCE 12-like isoform X1 | ||||
Refseq | XP_024044652.1 | 1e-123 | protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
Refseq | XP_024044654.1 | 1e-123 | protein FAR1-RELATED SEQUENCE 12 isoform X2 | ||||
TrEMBL | V4U2J1 | 1e-123 | V4U2J1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491138.1 | 1e-123 | (Citrus sinensis) | ||||
STRING | XP_006445005.1 | 1e-123 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-21 | FAR1 family protein |