PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3666_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 177aa    MW: 20039.4 Da    PI: 6.6771
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3666_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.11.2e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
    Neem_3666_f_1 17 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64
                     79********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0741268IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-231367IPR009057Homeodomain-like
SMARTSM007176.5E-171666IPR001005SANT/Myb domain
PfamPF002493.7E-181764IPR001005SANT/Myb domain
SuperFamilySSF466898.77E-241893IPR009057Homeodomain-like
CDDcd001671.73E-131964No hitNo description
Gene3DG3DSA:1.10.10.602.0E-76891IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAGSQMGWGI IDEGWRKGPW TAEEDRLLIE YVRLHGEGRW NSVARLAGLR RNGKSCRLRW  60
VNYLRPDLKR GQITPHEESI ILELHARWGN RAPYIPQAPR QETIANTVYP HTSEDQQAFF  120
YNSTGNSNNA IVTEPSNEEI LWDGLWNLDD FQGNFGGAAA TYATGKASLH NLVAPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-15179127100MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4743313e-40AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420401.28e-59transcription factor MYB2
RefseqXP_006480263.16e-59transcription factor MYB2
TrEMBLA0A0A0LIF83e-58A0A0A0LIF8_CUCSA; Uncharacterized protein
TrEMBLA0A2H5P2I92e-57A0A2H5P2I9_CITUN; Uncharacterized protein
TrEMBLV4S9P51e-57V4S9P5_9ROSI; Uncharacterized protein
STRINGXP_006480263.12e-58(Citrus sinensis)
STRINGXP_006420401.12e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.18e-52myb domain protein 305