PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3666_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 20039.4 Da PI: 6.6771 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.1 | 1.2e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Neem_3666_f_1 17 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.074 | 12 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 13 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.77E-24 | 18 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-13 | 19 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-7 | 68 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAGSQMGWGI IDEGWRKGPW TAEEDRLLIE YVRLHGEGRW NSVARLAGLR RNGKSCRLRW 60 VNYLRPDLKR GQITPHEESI ILELHARWGN RAPYIPQAPR QETIANTVYP HTSEDQQAFF 120 YNSTGNSNNA IVTEPSNEEI LWDGLWNLDD FQGNFGGAAA TYATGKASLH NLVAPFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-15 | 17 | 91 | 27 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474331 | 3e-40 | AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420401.2 | 8e-59 | transcription factor MYB2 | ||||
Refseq | XP_006480263.1 | 6e-59 | transcription factor MYB2 | ||||
TrEMBL | A0A0A0LIF8 | 3e-58 | A0A0A0LIF8_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A2H5P2I9 | 2e-57 | A0A2H5P2I9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S9P5 | 1e-57 | V4S9P5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480263.1 | 2e-58 | (Citrus sinensis) | ||||
STRING | XP_006420401.1 | 2e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 8e-52 | myb domain protein 305 |