PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3656_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 284aa MW: 30911.8 Da PI: 8.2774 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 118 | 140 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp Neem_3656_f_1 118 VPCIFFQK-GLCLKGDRCAFLHGP 140 69******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.803 | 24 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 4.2E-12 | 25 | 79 | No hit | No description |
SMART | SM00356 | 0.0018 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.756 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.03 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-5 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 114 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 115 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 118 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 119 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MVVAAQHQQQ QPQASTTSPE EEALKRNTDC VYFLASPLTC KKGSECEYRH SEYARVNPKD 60 CYFWLNGNCL NPKCGFRHPP LEGLLGTQTT VSTGSFPSLH LAATPAVQAP HHFGKQAVPC 120 IFFQKGLCLK GDRCAFLHGP NPTVNKAPQP TAVSPATEPP ALKKASSALQ KCTQEQKVPP 180 TNASKAIVVP SEANNPTLKT ENALQRNSVG IVRNAPPPSN TDNEFPQFKA SNVPPTVHGN 240 SLSLSNRLHV ARASDEQSFH HGKDTEEFFR ESSPGFDMKI NMGE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006470901.1 | 1e-136 | zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | V4U3W6 | 1e-135 | V4U3W6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470901.1 | 1e-136 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8968 | 12 | 15 |