PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_36512_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 201aa MW: 22806.6 Da PI: 6.15 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.6e-11 | 13 | 45 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 rg W++eEde+l+++++ +G g+W+++++ g Neem_36512_f_1 13 RGLWSPEEDEKLIKYITTHGHGSWSSVPKLAD-G 45 788*************************9887.5 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 49 | 92 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ +++d ++ lG++ W+ Ia++++ gRt++++k++w++ Neem_36512_f_1 49 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 92 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-14 | 5 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.6E-20 | 10 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 12 | 12 | 47 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-8 | 13 | 43 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.926 | 44 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-15 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 49 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-21 | 49 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-12 | 51 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGHNCCSKQK VKRGLWSPEE DEKLIKYITT HGHGSWSSVP KLADGLRLRG SFTEQEERII 60 IDIHRILGNR WAQIAKHLPG RTDNEVKNFW NSCVKKKLIA QGIDPNTHNL LASTQIISSN 120 NYGNNNAYEN NGIFNSGSFD EVLIEASPEK EEAMLQPKQQ QGVLNHDGQN MNQFDFDFLE 180 STVLPCGMYC NLSPIDQFAW D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 13 | 98 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023900539.1 | 1e-68 | transcription factor MYB26-like isoform X2 | ||||
Swissprot | Q8LPH6 | 1e-47 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A067GEZ2 | 3e-66 | A0A067GEZ2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P9K7 | 3e-66 | A0A2H5P9K7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4W6S3 | 3e-66 | V4W6S3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006468652.1 | 5e-67 | (Citrus sinensis) | ||||
STRING | XP_006448584.1 | 5e-67 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7955 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-62 | myb domain protein 67 |