PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3646_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CO-like

Protein Properties

Length: 315aa MW: 34237.4 Da PI: 7.0038

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3646_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.5	2e-06	20	50	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C++++ + fC+ +++ lC +C + +H Neem_3646_f_1 20 KPCDTCKAAAAAVFCRVDSVSLCLNCDSRIH 50 67****99*****************99 PP
2	CCT	70.9	3.1e-24	241	284	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Neem_3646_f_1 241 REAKVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRT 284 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.712	17	64	IPR000315	B-box-type zinc finger
SMART	SM00336	1.5E-8	17	64	IPR000315	B-box-type zinc finger
CDD	cd00021	1.00E-5	21	64	No hit	No description
Pfam	PF06203	4.2E-18	241	283	IPR010402	CCT domain
PROSITE profile	PS51017	16.529	241	283	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGIELHNVKG IAGGWSVGAK PCDTCKAAAA AVFCRVDSVS LCLNCDSRIH CVNKLAYRHE 60 RVWMCEVCEQ APAAVTCKAD AAAFGTCPTE GVDAGSWLLP NSKLGAENTP EMKSGDLFFS 120 EMDPFIDFEY QNSFQNHHSA GMDSVVPVQT TKPAPIPVGN SENCFDIDFC RSKLSSFSYQ 180 TQSLSQSVSS SSLDVGVVPD GNCMSDTSFP FGGNMSSGTD PNVSISATAT NQASQLCGID 240 REAKVLRYRE KRKNRKFEKT IRYHSRKAYA ETRPRIKGRF AKRTDADTEV DRLYNSAASA 300 AAFMADTQYG VVPSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006474138.1	1e-151	zinc finger protein CONSTANS-LIKE 5
Refseq	XP_024033868.1	1e-151	zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	1e-92	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	S5TE39	1e-156	S5TE39_LITCN; CONSTANS-like protein
STRING	XP_006453443.1	1e-151	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7899	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-90	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]