PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3631_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 918aa MW: 101252 Da PI: 6.253 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ + +++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ Neem_3631_f_4 123 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 214 99****************************97544444..48************************************************..8899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ Neem_3631_f_4 215 NQLLLGIRRA 224 999****997 PP | |||||||
2 | Auxin_resp | 121 | 9.1e-40 | 249 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fet++ss rr++Gt++g+sdldpvrWpnS+Wrs+k Neem_3631_f_4 249 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETDESSVRRYMGTITGISDLDPVRWPNSHWRSVK 332 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-49 | 108 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-42 | 116 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-21 | 122 | 223 | No hit | No description |
Pfam | PF02362 | 8.6E-22 | 123 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-24 | 123 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.52 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-34 | 249 | 332 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 9.81E-7 | 767 | 849 | No hit | No description |
PROSITE profile | PS51745 | 20.781 | 776 | 857 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 918 aa Download sequence Send to blast |
MTQVGKRFAG EKKCLNSELW HACAGPLVSL PPVGSRVVYF PQGHSEQVAA STNKEVDAHI 60 PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPQ EQKDVYLLPA ELGTPSKQPT 120 NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQTPPA QELIARDLHD NEWKFRHIFR 180 GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTV MPSSVLSSDS 240 MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRVSV GMRFRMLFET 300 DESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM 360 YPSPFPLRLK RPWPSGLPSF HALKDGDMSI NSPLMWLQGG IGDPGIQSLN FQGFGVTPWM 420 QPRLDAAIPG LQPDVYQAMA AAALQEMRTV DSSKLASQSL LQFQQPQNVS NGPASLIPRP 480 MLQQSHPQTA FLQSYQENQA SAQAQLLQQQ LQRQHSYNDQ RQQQQQVQQS QQLNQLSVQP 540 QISSVISTLP HLASSSQSQP PTLPSIPPQC QQSNFSDSLV NPIASSDVSS MHTILGSLSQ 600 DGASHLLNSN VSHPIISSAA MLTKQFLSAY CPPAAMLTKQ VTVDNHIPSA VSQCILPQVE 660 QLGTPQSNVS ELANLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSSLMG QHGLPNLKNI 720 GSENESLSLP FAASNFTNTV GTDFPLNSDM TTSSCVDESG FLQSSENVDQ VNPPNRTFVK 780 VHKSGSFGRS LDISKFSSYD ELRSELARMF GLEGQLEDPQ RSGWQLVFVD RENDVLLLGD 840 DPWHPHMMAA QDFSDPDCII EIEILSPLEV QQMGKEGLSS VSSVPGQRLS NNNCDEYVSR 900 QEMRSSSNGV ASMGSLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 11 | 353 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ461668 | 1e-164 | KJ461668.1 Dimocarpus longan cultivar Honghezi auxin response factor (ARF6-3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446840.1 | 0.0 | auxin response factor 6 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A067FJQ5 | 0.0 | A0A067FJQ5_CITSI; Auxin response factor | ||||
STRING | XP_006446840.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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