PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3624_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

BES1

Protein Properties

Length: 634aa MW: 71005.2 Da PI: 6.8855

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3624_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	148.1	7.3e-46	35	175	2	135
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasaspe 91 g +r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +gs+ +++ + ss+ +s++ Neem_3624_f_3 35 GVRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRSAsgtSAMVTSSSSHIMSQQ 130 7799**************************************************************9766555555544556666666669999 PP DUF822 92 sslq.sslkssalaspvesysaspksssfpspssldsislasaas 135 ++ + ++ +ss + ve + +++k + +p ps +d +++a+++s Neem_3624_f_3 131 TPPTaLRGVSSGYRNSVEYSTCRMKGVFMPTPSPYDLNPTAQSQS 175 99888999***************************99986544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.5E-38	37	167	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.0E-168	222	630	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.7E-159	223	534	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	6.9E-90	230	535	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	261	275	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	282	300	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	304	325	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	397	419	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	470	489	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	504	520	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-54	521	532	IPR001554	Glycoside hydrolase, family 14
Gene3D	G3DSA:3.20.20.80	2.4E-22	535	629	IPR013781	Glycoside hydrolase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MVGVDVGIAP NSSNNNQFKH QHQIQDQAGT PGGGGVRRSR PLEEKERTKL RERHRRAITA 60 RILAGLRRHG NYNLRVRADI NDVIAALARE AGWVVLPDGT TFPSRSQGSR SASGTSAMVT 120 SSSSHIMSQQ TPPTALRGVS SGYRNSVEYS TCRMKGVFMP TPSPYDLNPT AQSQSSALVG 180 DAGVGDAGEQ TESHSLIGGP IDTINDKQIV DVPTKIPERD FASTPYVPVY VMLPLGVINM 240 KCELVDPDGL LKQLRVLKSV NVDGVMVDCW WGIVEAHAPQ DYNWSGYKKL FQMVSELKLK 300 LQVVMSFHEC GGNFGDDVCI PLPHWVAEIG RTNPDIFFTD REGRRNPECL SWGIDRERVL 360 RGRTALEVYF DYMRSFRVEF DEFFQNGIIS MVEVGLGPCG ELRYPSCPVK HGWRYPGIGE 420 FQCYDQYLLK SMRKAAEARG HSFWARGPDN TGSYNSRPHE TGFFCDGGDY NGYYGRFFLS 480 WYSQVLVDHG DRVLSLAKLA FEGTCIAAKL SGMHWWYKTA SHAAELTAGF YNPYRHEDFQ 540 EALADPEGLA WQVLNAAWDV CVPVSSENAI PCHDRVGYNK ILDNAKPLSD PDGRYFSSFA 600 YLRLGPPLME RQNFMEFERF VKRMHGEAVM DLQV

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MVGVDVGIAP NSSNNNQFKH QHQIQDQAGT PGGGGVRRSR PLEEKERTKL RERHRRAITA  60
RILAGLRRHG NYNLRVRADI NDVIAALARE AGWVVLPDGT TFPSRSQGSR SASGTSAMVT  120
SSSSHIMSQQ TPPTALRGVS SGYRNSVEYS TCRMKGVFMP TPSPYDLNPT AQSQSSALVG  180
DAGVGDAGEQ TESHSLIGGP IDTINDKQIV DVPTKIPERD FASTPYVPVY VMLPLGVINM  240
KCELVDPDGL LKQLRVLKSV NVDGVMVDCW WGIVEAHAPQ DYNWSGYKKL FQMVSELKLK  300
LQVVMSFHEC GGNFGDDVCI PLPHWVAEIG RTNPDIFFTD REGRRNPECL SWGIDRERVL  360
RGRTALEVYF DYMRSFRVEF DEFFQNGIIS MVEVGLGPCG ELRYPSCPVK HGWRYPGIGE  420
FQCYDQYLLK SMRKAAEARG HSFWARGPDN TGSYNSRPHE TGFFCDGGDY NGYYGRFFLS  480
WYSQVLVDHG DRVLSLAKLA FEGTCIAAKL SGMHWWYKTA SHAAELTAGF YNPYRHEDFQ  540
EALADPEGLA WQVLNAAWDV CVPVSSENAI PCHDRVGYNK ILDNAKPLSD PDGRYFSSFA  600
YLRLGPPLME RQNFMEFERF VKRMHGEAVM DLQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1uko_A	1e-136	226	627	11	444	Beta-amylase
1uko_B	1e-136	226	627	11	444	Beta-amylase
1uko_C	1e-136	226	627	11	444	Beta-amylase
1uko_D	1e-136	226	627	11	444	Beta-amylase
1ukp_A	1e-136	226	627	11	444	Beta-amylase
1ukp_B	1e-136	226	627	11	444	Beta-amylase
1ukp_C	1e-136	226	627	11	444	Beta-amylase
1ukp_D	1e-136	226	627	11	444	Beta-amylase
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX139697	1e-105	JX139697.1 Citrus trifoliata beta-amylase 6 (BAM6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445048.2	0.0	LOW QUALITY PROTEIN: beta-amylase 7
Refseq	XP_006491094.1	0.0	beta-amylase 7 isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A2H5NQ48	0.0	A0A2H5NQ48_CITUN; Beta-amylase
STRING	XP_006491093.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2945	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]