PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3603_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WOX | ||||||||
Protein Properties | Length: 221aa MW: 25287.5 Da PI: 5.7185 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 90 | 150 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le ++e+ + +p +++++e+A++l ++e++V++WFqNrRa+ k+ Neem_3603_f_2 90 RQRWTPTSAQLQILECVYEEcKGTPGKQKIQEIAAELtqhgPISETNVYNWFQNRRARLKR 150 89*****************9889*****************99****************997 PP | |||||||
2 | Wus_type_Homeobox | 90.1 | 2.2e-29 | 89 | 152 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe +y++ tP k++iq+i+aeL+++G i+++NV++WFQNr+aR ++kq Neem_3603_f_2 89 ARQRWTPTSAQLQILECVYEECKGTPGKQKIQEIAAELTQHGPISETNVYNWFQNRRARLKRKQ 152 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-17 | 83 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.042 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-15 | 88 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-17 | 89 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.05E-13 | 90 | 152 | No hit | No description |
Pfam | PF00046 | 7.5E-18 | 90 | 150 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEWQNFQQQL QGGEMRVENQ SGSGGLCVKV MTDEQLELLR KQISVYASIC EQLVQMHKIF 60 SAQHEITGMR MGNPYYDPFV ASGGQKITAR QRWTPTSAQL QILECVYEEC KGTPGKQKIQ 120 EIAAELTQHG PISETNVYNW FQNRRARLKR KQSSSLPNNG ESETETPFES RMKNPESIQS 180 FENLNLQSPA DTGIDQMIAK MEIPGSFSFQ WQVERYHDML G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 151 | RRARLKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435385.1 | 1e-113 | WUSCHEL-related homeobox 13 | ||||
Refseq | XP_006473808.1 | 1e-113 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 4e-62 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A067GZW5 | 1e-111 | A0A067GZW5_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TAU1 | 1e-111 | V4TAU1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006473808.1 | 1e-112 | (Citrus sinensis) | ||||
STRING | XP_006435385.1 | 1e-112 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17223 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-58 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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