PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35923_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 272aa MW: 31388.6 Da PI: 8.9327 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 74 | 127 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Neem_35923_f_1 74 KKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 127 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115 | 4.4e-37 | 73 | 156 | 1 | 84 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE y+aLk++yd +++++++L++ev Neem_35923_f_1 73 EKKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKSKQLELLYDALKQEYDVVSRDKQKLQQEV 156 69*******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-19 | 64 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 72 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.39E-16 | 74 | 130 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 74 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 79 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-5 | 100 | 109 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-5 | 109 | 125 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDWNANLRAF VPVTRPETTS FDFLYNYNYD HFPGAMEMKQ HEAIAIAEKS IGFIPGAAAA 60 MEKNNMMNYG SQEKKKRLTS DQLESLERSF QEEIKLDPDR KMKLSRELGL QPRQIAVWFQ 120 NRRARWKSKQ LELLYDALKQ EYDVVSRDKQ KLQQEVIIHH SPCMHAHPST RIYPLKNWFQ 180 VIKLKSMLRE QGRRNKQVST GMTEVSGEET VESTSVAAVG NSNVEPRTSP SPRVGNPHQN 240 NIADCNYLFN VEEYNPAAVS SPFWSVMPAT YQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RRARWKSKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836203.1 | 6e-98 | PREDICTED: homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | A0A2I4FX25 | 1e-96 | A0A2I4FX25_JUGRE; homeobox-leucine zipper protein ATHB-22 | ||||
STRING | XP_006482366.1 | 7e-96 | (Citrus sinensis) | ||||
STRING | XP_006430338.1 | 7e-96 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-49 | homeobox 51 |