PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35757_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HB-other | ||||||||
Protein Properties | Length: 142aa MW: 16700.6 Da PI: 5.1123 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.8 | 5.2e-10 | 84 | 118 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ Neem_35757_f_1 84 KWPYPTEADKITLAESTGLDQKQINNWFINQRKRH 118 679*****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.762 | 58 | 121 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-20 | 59 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-13 | 60 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-29 | 63 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.19E-12 | 70 | 122 | No hit | No description |
Pfam | PF05920 | 5.1E-18 | 78 | 117 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MRTEVGASSD EDYSGGEIDP QEPQPRDEDR DLKDRLLPGV LKEEEERKAL KTDYYLEFSK 60 KKKKGKLPKE ARQTLLDWWN LHYKWPYPTE ADKITLAEST GLDQKQINNW FINQRKRHWK 120 PSENMQFAVT DNLSGAPLFS DD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044712.1 | 5e-59 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 7e-48 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A1R3IC41 | 7e-59 | A0A1R3IC41_9ROSI; Uncharacterized protein | ||||
STRING | EOY00544 | 2e-58 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 3e-40 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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