PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35723_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 126aa MW: 14538.7 Da PI: 10.6128

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35723_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.3	3.4e-25	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eY+++vGF++r+++ ++s+ ++++ +r++ C+k+g+ + ++ r++r++ r gCka++ vk +++gkw v++++++H+H+l+ Neem_35723_f_3 11 EFYAEYSRRVGFTMRIDQCRRSEIDKRVLSRRLSCNKQGFYVKARDVFGPVRKPRTSPREGCKAMMLVKFDESGKWIVSRFVKDHTHPLT 100 6**************************************99999999*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-23	11	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MEFDSEAAVK EFYAEYSRRV GFTMRIDQCR RSEIDKRVLS RRLSCNKQGF YVKARDVFGP 60 VRKPRTSPRE GCKAMMLVKF DESGKWIVSR FVKDHTHPLT VSSTRSFPSN SMALAMMTVR 120 PSSDSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010646072.1	3e-58	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_019073552.1	6e-58	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBL	F6I1X0	7e-57	F6I1X0_VITVI; Uncharacterized protein
STRING	VIT_00s0174g00130.t01	1e-57	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-43	FAR1 family protein