PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35720_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 33585.5 Da PI: 8.3659 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117 | 1.9e-36 | 9 | 129 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p G+rF P + el+v+yL+kk+++++l+ + i ev++y++ P++L+ + + k+ +fF++rd+k+ +gkr+nr+t sgyWk+tg dk+v+ + Neem_35720_f_1 9 PEGYRFVPWEGELLVHYLRKKLRNEPLPP-SRIMEVNLYQYSPEELE---EPRVKDKFFFTQRDRKHLNGKRPNRVTGSGYWKTTGGDKKVKY-G 98 89************************999.67**************8...3366889************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 g++vg kktLvfy+ ++kt+W+ he+r Neem_35720_f_1 99 GKTVGFKKTLVFYRRIPVGPQKTNWITHEFR 129 *************99999999*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-41 | 5 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.48 | 8 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-20 | 9 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNWNLDSFPE GYRFVPWEGE LLVHYLRKKL RNEPLPPSRI MEVNLYQYSP EELEEPRVKD 60 KFFFTQRDRK HLNGKRPNRV TGSGYWKTTG GDKKVKYGGK TVGFKKTLVF YRRIPVGPQK 120 TNWITHEFRD NNSSPSKKDG TDMKIDWVLC RIRQRLTERD HDDDVTNEPM NLDPVVNSTE 180 HANPSSEMRI IRFGSQAQFY AQSSYANSNN MNQQNTVPEI PSIMPPPDLS QFSGDMHQQN 240 TLQEMLHFDS TNGGLVNSTE YPFSFSYHTT YPEWSSTYQD SYRFWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-35 | 7 | 155 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-35 | 7 | 155 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-35 | 7 | 155 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-35 | 7 | 155 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-35 | 7 | 155 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-35 | 7 | 155 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015383320.1 | 1e-66 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A2H5P418 | 3e-65 | A0A2H5P418_CITUN; Uncharacterized protein | ||||
STRING | EOY32709 | 1e-51 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25583 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 6e-39 | NAC domain containing protein 32 |