PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_35472_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 347aa    MW: 39553.5 Da    PI: 6.7908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_35472_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.41.1e-56111371129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv ++++++ +++ evd++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ 
  Neem_35472_f_1  11 LPPGFRFHPTDEELITHYLTPKVFDSSFSA-TAMGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK- 103
                     79**************************99.88***************99999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++lvg+kktLvfy+grapkgekt+Wvmheyrle
  Neem_35472_f_1 104 AKALVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 137
                     999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-647161IPR003441NAC domain
PROSITE profilePS5100559.85511161IPR003441NAC domain
PfamPF023655.5E-3012136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEKYDHEQIE LPPGFRFHPT DEELITHYLT PKVFDSSFSA TAMGEVDLNK CEPWDLPRRA  60
KMGEKEWYFF CVRDRKYPTG LRTNRATEAG YWKATGKDKE IFKAKALVGM KKTLVFYRGR  120
APKGEKTNWV MHEYRLEGKY SAYNLPKTAK NEWVICRVFQ KSPGGKKTHI QGLVNNTMIN  180
PSSVLPPLMD SSPYNSETRT TAANENSHVT CFSDPMEDQK TQEEMIDSFN NSLLASSSSS  240
NPHSEISPAS ILLSKPSVSN AQTQLYTNQF LPTIANLQYP DSFLLQDQSI LKMLLDNHGP  300
NMKRNSKAEF SQYSVVSNHE LIQRSFDDQE DPSSSAGPVD LDCLWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-54816714171NO APICAL MERISTEM PROTEIN
1ut4_B2e-54816714171NO APICAL MERISTEM PROTEIN
1ut7_A2e-54816714171NO APICAL MERISTEM PROTEIN
1ut7_B2e-54816714171NO APICAL MERISTEM PROTEIN
4dul_A2e-54816714171NAC domain-containing protein 19
4dul_B2e-54816714171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6193493e-93FJ619349.1 Poncirus trifoliata NAC domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431201.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-131NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4T4H40.0V4T4H4_9ROSI; Uncharacterized protein
STRINGXP_006431201.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-130NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]