PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35472_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 39553.5 Da PI: 6.7908 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.4 | 1.1e-56 | 11 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv ++++++ +++ evd++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Neem_35472_f_1 11 LPPGFRFHPTDEELITHYLTPKVFDSSFSA-TAMGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK- 103 79**************************99.88***************99999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grapkgekt+Wvmheyrle Neem_35472_f_1 104 AKALVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 137 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-64 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.855 | 11 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-30 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEKYDHEQIE LPPGFRFHPT DEELITHYLT PKVFDSSFSA TAMGEVDLNK CEPWDLPRRA 60 KMGEKEWYFF CVRDRKYPTG LRTNRATEAG YWKATGKDKE IFKAKALVGM KKTLVFYRGR 120 APKGEKTNWV MHEYRLEGKY SAYNLPKTAK NEWVICRVFQ KSPGGKKTHI QGLVNNTMIN 180 PSSVLPPLMD SSPYNSETRT TAANENSHVT CFSDPMEDQK TQEEMIDSFN NSLLASSSSS 240 NPHSEISPAS ILLSKPSVSN AQTQLYTNQF LPTIANLQYP DSFLLQDQSI LKMLLDNHGP 300 NMKRNSKAEF SQYSVVSNHE LIQRSFDDQE DPSSSAGPVD LDCLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 8 | 167 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 8 | 167 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 8 | 167 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 8 | 167 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 8 | 167 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 8 | 167 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ619349 | 3e-93 | FJ619349.1 Poncirus trifoliata NAC domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431201.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-131 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | V4T4H4 | 0.0 | V4T4H4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431201.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-130 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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