PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35397_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25424.3 Da PI: 9.8661 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.9e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk Neem_35397_f_1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.563 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.05E-24 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEGFLIS 120 SRGTEIQSMQ CYWTNPDKIN SVEHLGQMEN SLREYLNQIR VHKENLGKQQ LMSLECSSQF 180 QHGMHIPFRL GSEQQLQPLS WIPSNDNRPL VLPEDPNLLS HR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438714.1 | 1e-135 | agamous-like MADS-box protein AGL30 isoform X2 | ||||
Refseq | XP_024041454.1 | 1e-135 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_024956614.1 | 1e-135 | agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 1e-87 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A2H5N8Y1 | 1e-134 | A0A2H5N8Y1_CITUN; Uncharacterized protein | ||||
STRING | XP_006483134.1 | 1e-134 | (Citrus sinensis) | ||||
STRING | XP_006438714.1 | 1e-134 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 9e-79 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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