PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34800_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 346aa MW: 37408.1 Da PI: 5.5508

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34800_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.7e-16	14	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ +Rt++++k++w+++l Neem_34800_f_1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAAthlPKRTDNEIKNYWNTHL 64 79******************888887766666669*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-23	5	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.8E-16	8	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.825	9	68	IPR017930	Myb domain
SMART	SM00717	6.0E-15	13	66	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-15	14	64	IPR001005	SANT/Myb domain
CDD	cd00167	9.01E-15	16	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAATHLPK RTDNEIKNYW 60 NTHLKKRLAK MGIDPVTHKP KNDSLLSTTG GEGQSKNAAN LSHMAQWESA RLEAEARLVR 120 ESKLRSHSFH HQQITSGFPP PPPSSSASTS ASAQIMHKST APWTAGIGGD LESPTSTLTF 180 SENNAPPIMN SGNIGVNSMP MIEFVGTSGS SEAGIIKEEG EQQDWKGFGS STSLQPEHKE 240 GIENSLSFTS SIQDMTNISM EGPWTPESLR GNSSVHIGNS MEEGFTNLLL NDSLDQPDFS 300 DSGKDSENSG GGGGSDSGSD YYQDNKNYWN SILNLVNSSP SNSPMF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAATHLPK RTDNEIKNYW  60
NTHLKKRLAK MGIDPVTHKP KNDSLLSTTG GEGQSKNAAN LSHMAQWESA RLEAEARLVR  120
ESKLRSHSFH HQQITSGFPP PPPSSSASTS ASAQIMHKST APWTAGIGGD LESPTSTLTF  180
SENNAPPIMN SGNIGVNSMP MIEFVGTSGS SEAGIIKEEG EQQDWKGFGS STSLQPEHKE  240
GIENSLSFTS SIQDMTNISM EGPWTPESLR GNSSVHIGNS MEEGFTNLLL NDSLDQPDFS  300
DSGKDSENSG GGGGSDSGSD YYQDNKNYWN SILNLVNSSP SNSPMF

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004962	6e-46	AP004962.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28H14, TM0141, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007032600.2	1e-165	PREDICTED: myb-related protein Myb4
Refseq	XP_022751935.1	1e-165	transcription factor MYB106-like
Swissprot	Q9LXF1	7e-86	MYB16_ARATH; Transcription factor MYB16
TrEMBL	A0A061EF18	1e-162	A0A061EF18_THECC; Myb domain protein 106
STRING	EOY03526	1e-163	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-72	myb domain protein 16

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]