PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34778_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 37958.7 Da PI: 7.0087 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.6 | 8e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv + +++ ++i +vd++k ePw+Lp+k+k +ekewyfF+ rd+ky+tg r+nrat sgyWkatgkdke+++ Neem_34778_f_1 16 LPPGFRFHPTDEELISHYLYKKVFDVSFSS-RAIGDVDLNKNEPWELPRKAKMGEKEWYFFCMRDRKYPTGLRTNRATLSGYWKATGKDKEIYR- 108 79*************************999.89***************99999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgekt+Wvmheyrle Neem_34778_f_1 109 GKTLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 142 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-64 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MENVSGVVKE DDQMDLPPGF RFHPTDEELI SHYLYKKVFD VSFSSRAIGD VDLNKNEPWE 60 LPRKAKMGEK EWYFFCMRDR KYPTGLRTNR ATLSGYWKAT GKDKEIYRGK TLVGMKKTLV 120 FYRGRAPKGE KTNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSGG KKTHISELMR 180 LGSYGDELDP SGLPPLMDSS PGNNTNTTVA DSAYVPCFSN PIDVQRNQQT TIDCFNNNPL 240 ISNSSSNMQQ FPGSVLRALI ENNGSNMSQS LSFKTEREMI SVSQDTCLTV TADMNPEISS 300 VVSNLEIPKR PFDDQDAPST SAPSGDLDCF WNFNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 8 | 172 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 8 | 172 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614789.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Refseq | XP_021614790.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-147 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0M3R852 | 0.0 | A0A0M3R852_MANES; NAC transcription factors 17 | ||||
STRING | cassava4.1_010528m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-148 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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