PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34778_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 335aa    MW: 37958.7 Da    PI: 7.0087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34778_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68e-56161421129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL kkv + +++  ++i +vd++k ePw+Lp+k+k +ekewyfF+ rd+ky+tg r+nrat sgyWkatgkdke+++ 
  Neem_34778_f_1  16 LPPGFRFHPTDEELISHYLYKKVFDVSFSS-RAIGDVDLNKNEPWELPRKAKMGEKEWYFFCMRDRKYPTGLRTNRATLSGYWKATGKDKEIYR- 108
                     79*************************999.89***************99999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfy+grapkgekt+Wvmheyrle
  Neem_34778_f_1 109 GKTLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 142
                     999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6412166IPR003441NAC domain
PROSITE profilePS5100559.78316166IPR003441NAC domain
PfamPF023652.3E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MENVSGVVKE DDQMDLPPGF RFHPTDEELI SHYLYKKVFD VSFSSRAIGD VDLNKNEPWE  60
LPRKAKMGEK EWYFFCMRDR KYPTGLRTNR ATLSGYWKAT GKDKEIYRGK TLVGMKKTLV  120
FYRGRAPKGE KTNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSGG KKTHISELMR  180
LGSYGDELDP SGLPPLMDSS PGNNTNTTVA DSAYVPCFSN PIDVQRNQQT TIDCFNNNPL  240
ISNSSSNMQQ FPGSVLRALI ENNGSNMSQS LSFKTEREMI SVSQDTCLTV TADMNPEISS  300
VVSNLEIPKR PFDDQDAPST SAPSGDLDCF WNFNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5581726171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5581726171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5581726171NO APICAL MERISTEM PROTEIN
1ut7_B1e-5581726171NO APICAL MERISTEM PROTEIN
3swm_A1e-5581729174NAC domain-containing protein 19
3swm_B1e-5581729174NAC domain-containing protein 19
3swm_C1e-5581729174NAC domain-containing protein 19
3swm_D1e-5581729174NAC domain-containing protein 19
3swp_A1e-5581729174NAC domain-containing protein 19
3swp_B1e-5581729174NAC domain-containing protein 19
3swp_C1e-5581729174NAC domain-containing protein 19
3swp_D1e-5581729174NAC domain-containing protein 19
4dul_A1e-5581726171NAC domain-containing protein 19
4dul_B1e-5581726171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614789.10.0NAC domain-containing protein 100-like
RefseqXP_021614790.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-147NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0M3R8520.0A0A0M3R852_MANES; NAC transcription factors 17
STRINGcassava4.1_010528m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-148NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]