PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3468_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family SRS
Protein Properties Length: 175aa    MW: 18372.4 Da    PI: 8.7358
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3468_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70290.14.8e-28213640154
         DUF702  40 kstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel..kskkqsalsstkls.saeskkeletss............lPeevsseavf 115
                    +stWvpaa+rre++ + a +  +          ++   kr+r l  + ++++++ s +++ +a++++ l++++            lP +v+++a f
  Neem_3468_f_2   2 RSTWVPAARRREKKLMSAVSGGSCGGGGggssgSSCGVKRPRVLwpNVNASTSTPSPSTPiNASASTALSFNTipchqeesfkksLPGQVQAAANF 97 
                    9***********9777776654443333555566666777777744222222222222221222222222222666777777888*********** PP

         DUF702 116 rcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                    rc+rv+++ d+e+e++Y ++v+i+GhvfkG+Lyd+G +e
  Neem_3468_f_2  98 RCIRVTAITDDEAEVGYVATVNISGHVFKGYLYDHGYDE 136
                    ************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-271135IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016248.9E-2387133IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRSTWVPAAR RREKKLMSAV SGGSCGGGGG GSSGSSCGVK RPRVLWPNVN ASTSTPSPST  60
PINASASTAL SFNTIPCHQE ESFKKSLPGQ VQAAANFRCI RVTAITDDEA EVGYVATVNI  120
SGHVFKGYLY DHGYDEKKLF PCISGMQMEN DVSTARTRDS SSPVGDQSGY AASGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816ARRREKKLM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067729.21e-38PREDICTED: LOW QUALITY PROTEIN: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_011020409.11e-38PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A2I4GZU25e-37A0A2I4GZU2_JUGRE; protein LATERAL ROOT PRIMORDIUM 1
STRINGPOPTR_0003s19550.11e-37(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-23Lateral root primordium (LRP) protein-related