PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34206_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 365aa MW: 41154.2 Da PI: 8.652

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34206_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.4e-32	97	150	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Neem_34206_f_1 97 PRLRWTPDLHLAFVHAVEKLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 150 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-30	93	151	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.349	93	153	IPR017930	Myb domain
SuperFamily	SSF46689	1.09E-14	95	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-23	97	152	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-9	98	149	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MESMTDTIEI SSDENKSNAS KIQAQNSSLA SSQKCSSFDL NLEAADDEND SPTNAPYKAY 60 VNDRSSPEGT SSTNTDATME GKERATMVRQ YVRSKMPRLR WTPDLHLAFV HAVEKLGGQE 120 RATPKLVLQL MNVKGLSIAH VKSHLQMYRS KKLDASGLVV SQNNRSMQGR HHILEMYQRF 180 DPHGNLRMDN RNYMSSPLLK QPHHPWASNG QYCSRFSPLR TCGDASLDEI QVKSAIFQNE 240 KKLSSSNLFE VKEAMAGNEP IRPSRFLEEK RWPPREMIGN QGRLRDNSLS ISWDDSCAVR 300 SSTCNGRITG IKDQFQPRTC SSMFTSNSYD SKFQTSPLLE AQRLQIGEAH CVKQENLSPD 360 LKLSL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MESMTDTIEI SSDENKSNAS KIQAQNSSLA SSQKCSSFDL NLEAADDEND SPTNAPYKAY  60
VNDRSSPEGT SSTNTDATME GKERATMVRQ YVRSKMPRLR WTPDLHLAFV HAVEKLGGQE  120
RATPKLVLQL MNVKGLSIAH VKSHLQMYRS KKLDASGLVV SQNNRSMQGR HHILEMYQRF  180
DPHGNLRMDN RNYMSSPLLK QPHHPWASNG QYCSRFSPLR TCGDASLDEI QVKSAIFQNE  240
KKLSSSNLFE VKEAMAGNEP IRPSRFLEEK RWPPREMIGN QGRLRDNSLS ISWDDSCAVR  300
SSTCNGRITG IKDQFQPRTC SSMFTSNSYD SKFQTSPLLE AQRLQIGEAH CVKQENLSPD  360
LKLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024950476.1	1e-107	uncharacterized protein LOC102628788
Refseq	XP_024950477.1	1e-107	uncharacterized protein LOC102628788
TrEMBL	V4W290	1e-104	V4W290_9ROSI; Uncharacterized protein
STRING	XP_006469002.1	1e-106	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-39	G2-like family protein