PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34120_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26297.3 Da PI: 8.2789 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.8 | 6.9e-26 | 48 | 175 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevl 93 ++G+rF+P+de l ++yL k +g++ ++++ ik+vd+y+++P+dL +++ ++ ++yfF++ +kky+ + + g Wk+t + +v+ Neem_34120_f_1 48 AVGVRFNPKDEVLASHYLFGKESGSSgGPIFSLIKDVDVYQHDPSDLSrLAYDFGKGKMYFFTPLNKKYKV---P--GPSGGCWKKTREqPSSVK 137 68*****************99998887788899**************944555677799*********963...2..24589****998356777 PP NAM 94 skkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 k+g+ v +k tLv+y ++++++++kt+W+m+ey l Neem_34120_f_1 138 GKDGNPVATKSTLVYYkndQKQNSNAVKTQWLMKEYML 175 78999***********55445777888*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-28 | 44 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.453 | 47 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-15 | 49 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAAPATMASS SSSKYANEGK AYNLSKISNS LIADDSIKWE QKWEQKVAVG VRFNPKDEVL 60 ASHYLFGKES GSSGGPIFSL IKDVDVYQHD PSDLSRLAYD FGKGKMYFFT PLNKKYKVPG 120 PSGGCWKKTR EQPSSVKGKD GNPVATKSTL VYYKNDQKQN SNAVKTQWLM KEYMLLDNQL 180 SKRNARHSWT LCVVYNSKRH GDCSQKMSDD EDNEFISSDS CEDSASDMSQ SDSDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-17 | 44 | 198 | 12 | 169 | Stress-induced transcription factor NAC1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18525 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 3e-20 | NAC domain containing protein 32 |