PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34010_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 20310.6 Da PI: 10.2379 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 3 | 128 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ Neem_34010_f_1 3 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 96 79***************************.89***************8778899***************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl Neem_34010_f_1 97 SRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 128 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.915 | 2 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-53 | 3 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-26 | 4 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MVMPGFRFHP TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWFF 60 YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSENSRSI GLKKTLVFYS GKAPKGIRTS 120 WIMNEYRLPQ HETERYQKFL FTPQHKYMYL RMKISACLWL HTIILLQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 4 | 128 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 4 | 128 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 4 | 128 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 4 | 128 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 4 | 128 | 22 | 145 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 4 | 128 | 19 | 142 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 4 | 128 | 19 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577909 | 2e-59 | JX577909.1 Gossypium hirsutum clone NBRI_GE9819 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519375.1 | 4e-99 | NAC domain-containing protein 35 | ||||
Refseq | XP_012078844.1 | 3e-99 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 2e-94 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | R4N5L6 | 7e-98 | R4N5L6_JATCU; NAC transcription factor 036 | ||||
STRING | XP_002519375.1 | 2e-98 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-96 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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