PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3353_f_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 248aa    MW: 27730 Da    PI: 6.6674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3353_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-091443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g W++eEde+l++ ++++G g+W+++++ 
    Neem_3353_f_5 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQ 43
                     678************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-15643IPR009057Homeodomain-like
SuperFamilySSF466891.29E-8745IPR009057Homeodomain-like
PROSITE profilePS512949.929956IPR017930Myb domain
PfamPF002493.9E-71443IPR001005SANT/Myb domain
CDDcd001671.23E-61742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQADRFATS HHESSITSSQ  60
PSDFVGHFPL QQLNCTSNAK LSTASNSPLW FMQTSKSFDM NSEFSSTAIP TILPPVSSSL  120
LLSAPMSFKT SVTLPSDNHS IPSFTVNGSR YWEAADCSSS EKEAQLHLID NQPEDIKWPE  180
YFQTPSLLMA AALQTPQSLF NEIKSETHFL TDSSSGIWPH NQQQQVALQN SDICAKEIQR  240
LTATYGQI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3441202e-39KT344120.1 Betula platyphylla MYB61 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444636.11e-102transcription factor MYB61
TrEMBLA0A2H5NYP91e-101A0A2H5NYP9_CITUN; Uncharacterized protein
TrEMBLV4U6S61e-101V4U6S6_9ROSI; Uncharacterized protein
STRINGXP_006444636.11e-101(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.24e-27myb domain protein 55