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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_33443_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 24694 Da PI: 6.0448 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.6e-15 | 44 | 119 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ltpsdv+k++rlv+pkkfa ++ + ++e+ +l +d+ v l ++ +GW++Fvk+n+Lk++D+++F++ + Neem_33443_f_2 44 FQKELTPSDVGKLNRLVIPKKFAVKYfpQ-ISESREELAENDKADD---VLL--------VFHDRGWNRFVKENQLKANDTITFYFCD 119 99************************843.3334445553443333...333........34468********************653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-17 | 41 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-17 | 43 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.61E-15 | 43 | 117 | No hit | No description |
Pfam | PF02362 | 2.9E-13 | 44 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-10 | 44 | 132 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MIRDGSYASK FAEFLRNHSK SVQKDKFTQM ETHTNGWLMC RQLFQKELTP SDVGKLNRLV 60 IPKKFAVKYF PQISESREEL AENDKADDVL LVFHDRGWNR FVKENQLKAN DTITFYFCDL 120 REHANVTKTF CMIDVIKGES SDSLTEVSNR CADIQVDLQL QLGQRVVHDN NQNRVEEDDK 180 RSKLQAAEEM ELIGPSPISD SETKPLKLFG VAIF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024953690.1 | 1e-94 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_024953691.1 | 1e-94 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_024953692.1 | 1e-94 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C688 | 1e-32 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A2H5PWN1 | 7e-98 | A0A2H5PWN1_CITUN; Uncharacterized protein | ||||
STRING | XP_006473975.1 | 4e-94 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 5e-35 | RAV family protein |