PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_33431_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 494aa MW: 57671.1 Da PI: 8.978

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_33431_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.3	3.2e-26	1	81	3	84
trihelix 3 tkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 ++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+q Neem_33431_f_1 1 PRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQ 81 68********************************999***************************98..55556999986 PP
2	trihelix	44.4	4.4e-14	88	134	39	87
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Neem_33431_f_1 88 EEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 134 79***************************98..55667*****85 PP
3	trihelix	68.1	1.7e-21	336	421	2	83
trihelix 2 WtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W ++e+ +Li++r++me+r+++++ +++ lWee+++km g+er ++ +Ck+kw+n+n +k+k+ ++k+++e+s++c+yf+ Neem_33431_f_1 336 WGDSEITKLIQLRTSMETRFQQSNtesSQEVLWEEIAAKMVCLGYERrNALMCKDKWDNINHFLRKTKDLSNKKRKENSRSCSYFQ 421 *******************86433399************7769**********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.22E-16	1	64	No hit	No description
PROSITE profile	PS50090	5.831	1	57	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-17	2	84	No hit	No description
Pfam	PF13837	6.1E-9	86	135	No hit	No description
PROSITE profile	PS50090	6.435	328	396	IPR017877	Myb-like domain
Pfam	PF13837	5.7E-14	334	424	No hit	No description
CDD	cd12203	2.69E-19	336	403	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
PRQETLTLLE IRSRLDSKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY 60 KKTKEGKAGR QDGKHYRFFR QRCRIMSEEH GYQRSGKKCR EKFENLYKYY KKTKEGKAGR 120 QDGKHYRFFR QLEALYGDSS NSVSVPETPL VGSSLRFHTT SNTSNQANQE TLQSQKLCDS 180 LSLSNSSEFE SSSSDDNDLC TMENDSTDKR RKKRGRRGWK IKIKEFIDSQ MRKLMERQEA 240 WLEKLTKTLE IKEQERILRE EEWRRQEESR IDREHKFWAK ERAWIEARDA ALMEALQNLT 300 GRQLKTSSSE ELIAADNQNE NGSEAINNSV KATDSWGDSE ITKLIQLRTS METRFQQSNT 360 ESSQEVLWEE IAAKMVCLGY ERRNALMCKD KWDNINHFLR KTKDLSNKKR KENSRSCSYF 420 QSNDSSLYSQ GGAAYCELNE QGPETARLQL NDSSSPSNSN VGNAVSDSCF RFLMADGDHL 480 WDNYGLKLGN GENQ

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

PRQETLTLLE IRSRLDSKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY  60
KKTKEGKAGR QDGKHYRFFR QRCRIMSEEH GYQRSGKKCR EKFENLYKYY KKTKEGKAGR  120
QDGKHYRFFR QLEALYGDSS NSVSVPETPL VGSSLRFHTT SNTSNQANQE TLQSQKLCDS  180
LSLSNSSEFE SSSSDDNDLC TMENDSTDKR RKKRGRRGWK IKIKEFIDSQ MRKLMERQEA  240
WLEKLTKTLE IKEQERILRE EEWRRQEESR IDREHKFWAK ERAWIEARDA ALMEALQNLT  300
GRQLKTSSSE ELIAADNQNE NGSEAINNSV KATDSWGDSE ITKLIQLRTS METRFQQSNT  360
ESSQEVLWEE IAAKMVCLGY ERRNALMCKD KWDNINHFLR KTKDLSNKKR KENSRSCSYF  420
QSNDSSLYSQ GGAAYCELNE QGPETARLQL NDSSSPSNSN VGNAVSDSCF RFLMADGDHL  480
WDNYGLKLGN GENQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	216	KRRKKRGRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022743398.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-142	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A061ESW5	0.0	A0A061ESW5_THECC; Duplicated homeodomain-like superfamily protein, putative
STRING	EOY08130	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-120	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]